Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq23020 154 4e-32 seq33511 136 9e-27 seq16386 131 4e-25 seq9583 123 6e-23 seq61872 114 3e-20 >seq23020 Length=748909 Score = 154 bits (170), Expect = 4e-32 Identities = 169/222 (76%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||||| |||| Sbjct 60738 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 60794 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| |||||||| || || || Sbjct 60795 TGGA--GCCCAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCAT 60852 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| ||||| |||||||| |||||||| | ||||| Sbjct 60853 CCCACCTGACCAGCAGAGGCTGATCTTTGCCGGCAAACAGCTAGAAGATGGCCGCACTCT 60912 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || ||||| || || Sbjct 60913 GTCTGACTACAACATCCAGAAGGAGTCCACTCTGCACCTCGT 60954 Score = 154 bits (170), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 60977 CAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGCG 61034 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||||||||| || ||||| |||||||| || || ||||| || ||||||| Sbjct 61035 ACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCACCTGACCAGC 61094 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||||||||| || ||||| |||||||| | ||||| | ||||| ||| Sbjct 61095 AGAGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTATCTGATTACAACA 61154 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 61155 TCCAGAAGGAGTCCACCCTGCACCTCGT 61182 >seq33511 Length=8354299 Score = 136 bits (150), Expect = 9e-27 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || || || || || ||||| || |||||||| || ||| Sbjct 8199439 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTTGAGGTGGA--GCCCAGTG 8199496 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||||||||| ||||| ||||| ||||||| ||||| |||| ||| ||||||| Sbjct 8199497 AAACCATCGAGAATGTCAAGGCCAAGATCTAGGACAAGGAAGGCATCCTTCCTGACCAGC 8199556 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||| || ||||||| ||||| || |||| |||| ||| |||| || ||| Sbjct 8199557 AGCGGCTGATCCTCACCGGAAAGCAGCTGGAGGATGACTGGACCCTTTCCGACTACAACA 8199616 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || ||| | || || Sbjct 8199617 TCCAGAAAGAGTCCACCCTGTACCTGGT 8199644 >seq16386 Length=4700455 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 632259 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 632316 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| |||||| ||||||||||| || |||| || ||||||| Sbjct 632317 ACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCAGC 632376 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || ||||| || || || || || ||||| || | || || |||| || ||| Sbjct 632377 AGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACAACA 632436 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || ||||| || || Sbjct 632437 TCCAGAAGGAGTCCACCCTGCACCTGGT 632464 Score = 127 bits (140), Expect = 5e-24 Identities = 150/201 (75%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 631119 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 631176 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| |||||| ||||||||||| || |||| || ||||||| Sbjct 631177 ACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCAGC 631236 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || || || ||||| || | || || |||| || | | Sbjct 631237 AGAGGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACATCA 631296 Query 178102 TCCAAAAAGAATCAACACTGC 178122 |||| || || || || |||| Sbjct 631297 TCCAGAAGGAGTCCACCCTGC 631317 Score = 118 bits (130), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 631347 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 631404 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||||||||| |||||| ||||||||||| || |||| || ||||||| Sbjct 631405 ATACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCAGC 631464 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || ||||| || || || || || ||||| || | || || |||| || | | Sbjct 631465 AGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACATCA 631524 Query 178102 TCCAAAAAGAATCAACACTGC 178122 |||| || || || || |||| Sbjct 631525 TCCAGAAGGAGTCCACCCTGC 631545 Score = 118 bits (130), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 631575 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 631632 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||||||||| |||||| ||||||||||| || |||| || ||||||| Sbjct 631633 ATACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCAGC 631692 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || ||||| || || || || || ||||| || | || || |||| || | | Sbjct 631693 AGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACATCA 631752 Query 178102 TCCAAAAAGAATCAACACTGC 178122 |||| || || || || |||| Sbjct 631753 TCCAGAAGGAGTCCACCCTGC 631773 Score = 118 bits (130), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 631803 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 631860 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||||||||| |||||| ||||||||||| || |||| || ||||||| Sbjct 631861 ATACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCAGC 631920 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || ||||| || || || || || ||||| || | || || |||| || | | Sbjct 631921 AGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACATCA 631980 Query 178102 TCCAAAAAGAATCAACACTGC 178122 |||| || || || || |||| Sbjct 631981 TCCAGAAGGAGTCCACCCTGC 632001 Score = 118 bits (130), Expect = 3e-21 Identities = 148/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || ||| Sbjct 632031 CAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTGGA--GCCCAGTG 632088 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 | ||||| ||||||||||| |||||| ||||||||||| || |||| || ||||||| Sbjct 632089 ATACCATTGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCACCCCGACCAGC 632148 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || ||||| || || || || || ||||| || | || || |||| || | | Sbjct 632149 AGATGCTGATCTTTGCAGGCAAGCATCTGGAAGACGGCCGCACCCTGTCCGACTACATCA 632208 Query 178102 TCCAAAAAGAATCAACACTGC 178122 |||| || || || || |||| Sbjct 632209 TCCAGAAGGAGTCCACCCTGC 632229 >seq9583 Length=785227 Score = 123 bits (136), Expect = 6e-23 Identities = 162/222 (73%), Gaps = 7/222 (3%) Strand=Plus/Plus Query 177910 AGGTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGG 177969 |||| ||||||| | || |||||||| || || || || || || |||||| | || | Sbjct 66943 AGGTCAAAATGC---AGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCTTGGAAG 66999 Query 177970 TGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAAT 178027 |||| || ||| |||||||||||||||| || ||||| |||||| | || || || Sbjct 67000 TGGA--GCCCAGCGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACGAGGAGGGCAT 67057 Query 178028 CCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCT 178087 ||| || |||||||| | || ||||| ||||| || ||||| |||||||| ||| Sbjct 67058 CCCACCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCACGTTCT 67117 Query 178088 TGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || ||| |||| || || || || ||||| || || Sbjct 67118 GTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTCGT 67159 >seq61872 Length=227 Score = 114 bits (126), Expect = 3e-20 Identities = 129/171 (75%), Gaps = 4/171 (2%) Strand=Plus/Minus Query 177961 CCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAA 178018 |||| |||||||| || ||| ||||||| ||||||||||| |||||| |||||||| Sbjct 227 CCCTGGAGGTGGA--GCCCAGTGACACCATTGAGAACGTCAAGGCAAAGATCCAGGACAA 170 Query 178019 AGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || ||||| || |||||||| | || ||||| || || || ||||| ||||| || Sbjct 169 GGAGGGCATCCCCCCTGACCAGCAGAGGCTGATCTTTGCAGGCAAGCAGCTGGAAGACGG 110 Query 178079 AAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || || |||| || ||| |||| || || || || ||||| || || Sbjct 109 CCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGT 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1201341035217344