Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Nannospalax_20galili_20[refseq_20GCF_5F000622305.1_202014-06-05] 154,976 sequences; 3,061,424,619 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq23020 147 2e-30 seq16386 138 1e-27 seq61872 123 2e-23 seq17823 122 8e-23 seq9583 120 3e-22 >seq23020 Length=748909 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | || || ||||| ||| ||||||||| ||||| || || || Sbjct 61201 GCCACCCCGGAGACGAAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCAGA 61142 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || ||||||||||||||||| ||||| | ||| ||||| | || Sbjct 61141 TAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCAGGTGG 61082 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||||| | | |||||||| | |||||| Sbjct 61081 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCAC 61022 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || || ||||| ||||| ||||| ||||||||| Sbjct 61021 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATG 60973 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || ||||| ||| ||||||||| ||||| ||||| || || ||||| Sbjct 60963 AGACGGAGGACGAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGG 60904 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||| |||||||| || ||||| | ||| ||||| | || | || |||| Sbjct 60903 CCATCTTCTAGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCC 60844 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | ||||||||||| || Sbjct 60843 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACCTCCAGGGTG 60784 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| ||||| |||||||| || Sbjct 60783 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 60743 >seq16386 Length=4700455 Score = 138 bits (152), Expect = 1e-27 Identities = 165/222 (74%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| ||||| |||||||| |||||||| Sbjct 632473 AGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 632414 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || || |||||||| || || ||||| ||| ||||| | | | | || ||| Sbjct 632413 CCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCT 632354 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGA-CACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| ||| ||| |||| | || ||||| || | ||||||||||| Sbjct 632353 TTGTCCTGGATCTTTGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAG 632298 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| ||||| ||||| |||||||| Sbjct 632297 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632256 Score = 132 bits (146), Expect = 4e-26 Identities = 164/222 (74%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| |||| ||| ||||||||| ||| | |||||||| |||||||| Sbjct 631333 AGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGG 631274 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || || |||||||| || || ||||| | ||| ||||| | | | | || ||| Sbjct 631273 CCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCGGGGTGGATGCCCTCT 631214 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGA-CACA---GTGTCGCTCGACTCCACCTCCAC 41820 |||||| ||| ||| ||| |||| | || ||||| || | ||||||||||| Sbjct 631213 TTGTCCTGGATCTTTGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCAG 631158 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| ||||| ||||| |||||||| Sbjct 631157 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631116 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| |||| ||| ||||||||| ||| | |||||||| |||||||| Sbjct 631561 AGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGG 631502 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || || |||||||| || || ||||| ||| ||||| | | | | || ||| Sbjct 631501 CCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCT 631442 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGA-CACAGTG---TCGCTCGACTCCACCTCCAC 41820 |||||| ||| ||| ||| |||| | || || || || | ||||||||||| Sbjct 631441 TTGTCCTGGATCTTTGCCTT----GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAG 631386 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| ||||| ||||| |||||||| Sbjct 631385 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631344 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| |||| ||| ||||||||| ||| | |||||||| |||||||| Sbjct 631789 AGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGG 631730 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || || |||||||| || || ||||| ||| ||||| | | | | || ||| Sbjct 631729 CCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCT 631670 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGA-CACAGTG---TCGCTCGACTCCACCTCCAC 41820 |||||| ||| ||| ||| |||| | || || || || | ||||||||||| Sbjct 631669 TTGTCCTGGATCTTTGCCTT----GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAG 631614 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| ||||| ||||| |||||||| Sbjct 631613 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631572 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| |||| ||| ||||||||| ||| | |||||||| |||||||| Sbjct 632017 AGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGG 631958 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || || |||||||| || || ||||| ||| ||||| | | | | || ||| Sbjct 631957 CCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCT 631898 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGA-CACAGTG---TCGCTCGACTCCACCTCCAC 41820 |||||| ||| ||| ||| |||| | || || || || | ||||||||||| Sbjct 631897 TTGTCCTGGATCTTTGCCTT----GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAG 631842 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| ||||| ||||| |||||||| Sbjct 631841 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 631800 Score = 123 bits (136), Expect = 2e-23 Identities = 162/222 (73%), Gaps = 8/222 (4%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| |||| ||| ||||||||| ||| | |||||||| |||||||| Sbjct 632245 AGGCGGATCACCAGGGGCAGGGTGGACTCCTTCTGGATGATGTAGTCGGACAGGGTGCGG 632186 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || || |||||||| || || ||||| ||| ||||| | | | | || ||| Sbjct 632185 CCGTCTTCCAGATGCTTGCCTGCAAAGATCAGCATCTGCTGGTCGGGGTGGATGCCCTCT 632126 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGA-CACAGTG---TCGCTCGACTCCACCTCCAC 41820 |||||| ||| ||| ||| |||| | || || || || | ||||||||||| Sbjct 632125 TTGTCCTGGATCTTTGCCTT----GACGTTCTCAATGGTATCACTGGGCTCCACCTCCAG 632070 Query 41821 CGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || ||||| ||||| ||||| |||||||| Sbjct 632069 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 632028 >seq61872 Length=227 Score = 123 bits (136), Expect = 2e-23 Identities = 136/179 (76%), Gaps = 8/179 (4%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | |||||| ||||| ||| ||||||||| ||||| |||||||| |||||||| Sbjct 50 AGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 109 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 |||| || ||||||||||| || || ||||| | ||| ||||| | ||| | || |||| Sbjct 110 CCGTCTTCCAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCC 169 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCA 41819 |||||| ||| ||| ||| |||| | || ||||| || | ||||||||||| Sbjct 170 TTGTCCTGGATCTTTGCCTT----GACGTTCTCAATGGTGTCACTGGGCTCCACCTCCA 224 >seq17823 Length=3576200 Score = 122 bits (134), Expect = 8e-23 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA--GAGGGTGCGCTCGTCGT 41711 || || ||||| ||| ||||||||| ||||| ||||| || ||||||| || | || | Sbjct 944377 ACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGGGTG-GC-CATCTT 944320 Query 41712 CGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCA 41771 | ||||||||||| | ||| ||||| | ||| ||||| | ||||| || ||||||||| Sbjct 944319 CCAGCTGCTTGCCCGTGAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCATCCTTGTCCT 944260 Query 41772 TGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTT 41831 ||| || ||||| | | |||||||| | ||||||||||| || || || | Sbjct 944259 GGATATTGGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCCACCTCCAGGGTGATGGTCT 944200 Query 41832 TACCCGTCAGCGTCTTTACGAAAATCTG 41859 | || ||||| ||||| || || ||||| Sbjct 944199 TGCCAGTCAGGGTCTTCACAAAGATCTG 944172 >seq9583 Length=785227 Score = 120 bits (132), Expect = 3e-22 Identities = 159/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | || || ||||| ||| ||||||||| ||||| ||||| || || | | Sbjct 67168 AGACGGAGGACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAACGTGG 67109 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || |||||||||||||| || ||||| | ||| ||||| | || | || |||| Sbjct 67108 CCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATGCCCTCC 67049 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 | |||| ||| || ||||| | | |||||||| | |||||| |||| || Sbjct 67048 TCGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCCACTTCCAAGGTG 66989 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || || || || ||||| ||||| ||||| |||||||| || Sbjct 66988 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATTTT 66948 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461408424691200