Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq73029 86.0 5e-12 >seq73029 Length=1854 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| ||||| || || | | ||||| || || || | || Sbjct 1377 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTGGTGAAT 1436 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | || ||||| | |||||||| || || ||||||||||| || || || ||| Sbjct 1437 GGGGAGCTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 1496 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACAT 19111 |||||||| | ||||| || || || ||||| Sbjct 1497 AACATTGCCAGCTATGCCCTGCTCACNTACAT 1528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398922778234785