Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_001350.1
Length=112930
Score E
Sequences producing significant alignments: (Bits) Value
seq27450 266 2e-66
seq55113 131 1e-25
>seq27450
Length=349427
Score = 266 bits (294), Expect = 2e-66
Identities = 313/423 (74%), Gaps = 2/423 (0%)
Strand=Plus/Plus
Query 3978 CTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAAC 4037
||||||||| |||||| || ||||| || | ||| || || || || | |||||| ||
Sbjct 71481 CTTCTCATAGACTTCAGCTTCATACTTGATGCCTTTTTCCTCCTGAACCTCAGAAAGGAC 71540
Query 4038 ACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTC 4097
|| ||| |||||| | ||||||||| || | | ||||| |||||| |||| ||||
Sbjct 71541 ACCTGGGTATTCTGAGAGAAGTTTGTAGCTCCCCAAATCAATTTCTGGGAAAACCATGTC 71600
Query 4098 ACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCAT 4157
|| |||| | | ||||||||||| |||||||||||||| || | || ||| | | ||||
Sbjct 71601 ACTTTCAGATTTCTGCATGATCCTTGTCACAAACAGTTTGAGGTGGCCTGGCTGATTCAT 71660
Query 4158 AGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAA 4217
||| | ||||| ||||||| |||| | |||| ||| || |||||||||||| |||
Sbjct 71661 GGCTCCCTTATAAGCAGAACTGCCTCTGGCTGTCCAAACCTTGCCTACTTTATTTGATAA 71720
Query 4218 TTCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCT 4277
||| | ||||| |||||||||| ||||| || | ||| || || | ||||||||||||
Sbjct 71721 TTCCAGTTGTTCAATAAGTTTTAAGGCATCGTCCAGACTTTTGGCAAGAAAATGAGCTCT 71780
Query 4278 --ATGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGC 4335
||||| ||||| || || || ||||||| | |||||||| | ||||| ||
Sbjct 71781 CCTTGTGGTGATTCCTTGAGGTCTCTGTTGAGAACTATGTTAATTCTATCCTTTAACAGC 71840
Query 4336 CGGTTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTA 4395
| ||| |||||||||| |||| ||| || || | || ||| || | |||||||||
Sbjct 71841 CCGTTTTTCTCAGGAANGGAGATCCACGTTTTCCTGCCTGTAACTACCAGTTTCTGTTTA 71900
Query 4396 TCT 4398
||
Sbjct 71901 CCT 71903
>seq55113
Length=492985
Score = 131 bits (144), Expect = 1e-25
Identities = 100/119 (84%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
|| || |||||||| ||||| | |||||| ||||||||||||||||||||||| |||||
Sbjct 337338 TTGTAAACAGAACTGCCTCCNACTATCCAAACCATGTCTACTTTATTTGCTAACTCTGGT 337279
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283
||||| |||||||||| |||||||| | ||| || || | ||||||||||| |||||
Sbjct 337278 TGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGG 337220
Score = 129 bits (142), Expect = 4e-25
Identities = 100/119 (84%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224
|| || |||||||| ||||| | |||||| ||||||||||||||||||||||| |||||
Sbjct 334761 TTGTAAACAGAACTGCCTCCGACTATCCAAACCATGTCTACTTTATTTGCTAACTCTGGT 334702
Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283
||||| |||||||||| |||||||| | ||| || || | ||||||||||| |||||
Sbjct 334701 TGTTCAATAAGTTTTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGG 334643
Score = 122 bits (134), Expect = 6e-23
Identities = 98/117 (84%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115
||||||||||||||| | ||||| ||| || ||||| ||||||| |||||| ||||||||
Sbjct 340197 AAGTTTGTATTTCTCCAAATCAATTTCCGGGAAAAACGTGTCACTTTCAAATTCTTGCAT 340138
Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTT-CTTTATACA 4171
|||||| |||||||||||| | |||| || ||| | | |||| |||| ||||| |||
Sbjct 340137 GATCCTTGTCACAAACAGTCTGAGATGGCCTGGCTGATTCATGGCTTCCTTTAAACA 340081
Score = 102 bits (112), Expect = 6e-17
Identities = 88/109 (81%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349
||| || || | |||||||| | |||||||||| | |||||||| || |||||||||||
Sbjct 325369 CTTGAGCTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCAGG 325310
Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398
||| |||||||| || || ||||||||||| | |||||||||| ||
Sbjct 325309 AATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGATTCTGTTTACCT 325261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360725630643623
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |