Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq108307 269 3e-67
seq73029 143 3e-29
seq87169 122 1e-22
seq78026 109 6e-19
>seq108307
Length=83418
Score = 269 bits (298), Expect = 3e-67
Identities = 597/884 (68%), Gaps = 15/884 (2%)
Strand=Plus/Minus
Query 176373 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 176432
|| ||||| || |||| | ||||||| || | || ||| | || |||||| |||
Sbjct 78643 CTGGTGTTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGTTGATCCTCATAAAGTAC 78584
Query 176433 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 176492
| |||| || ||| | ||||| || | ||| | ||||||||||| |||||| ||||
Sbjct 78583 AGGAAGCTCCAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGACCTGCTC 78524
Query 176493 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 176552
| | | || || | ||||| ||||| |||||| ||| | || | |||| ||| ||||
Sbjct 78523 TCTGTCTTCACCGTTCCATTCTGGATTCACTATGTTGTA-TGGA--ATGAGTGGTGTTTT 78467
Query 176553 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 176612
|| | ||||||||||| || || | | |||| | | ||||||| || |
Sbjct 78466 GGCCACCACATGTGTAAACTGATCTCTGGGTTTTATTACCTTGCCTTGTACAGTGAGATA 78407
Query 176613 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 176672
|||| |||||||||||| ||| | |||||||| || || ||||| ||||||| |||
Sbjct 78406 TTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGTCCATGCTGTGTTTGCC 78347
Query 176673 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 176732
| || | || || || | || | | ||| | | ||||||| ||||||
Sbjct 78346 CTTAGAGCCCGGACTGTGACTTTTGCTACCATCACCAGCATCATTACCTGGGGACTGGCA 78287
Query 176733 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGG-- 176790
||| || | | ||||||||| |||| |||| |||||| || ||| || |
Sbjct 78286 GGGCTGGCAGCATTACCTGAATTTATCTTCCATGAGTCCCAAGACAGCATTGG-AGAGCC 78228
Query 176791 -TTCAGTGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGT 176848
||| || | |||| ||||||||| | | || | |||| ||| ||| |
Sbjct 78227 TTTC--TGCGGTCCTCGTTACCCAGAGG-GAGAAGAAGACAGCTGGAAGCGTTTCCATGC 78171
Query 176849 TGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTA 176908
| | ||| ||| || || | | ||||| |||||||||| | ||||||| |
Sbjct 78170 TCTGAGAATGAATATCTTTGGTTTAGCCCTCCCTCTCCTCATTATGGTTATCTGCTATTC 78111
Query 176909 TGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCT 176968
| ||| || | || ||| |||| |||||| || || ||| ||||||||||| ||||
Sbjct 78110 AGGAATCATTAAAACTCTGCTGAGATGCCCCAATAAAAAAAAGCACAAGGCCATCCGGCT 78051
Query 176969 CATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 177028
|| ||||| ||||| | | || |||| |||||||||| || |||||| | ||||||||
Sbjct 78050 TATTTTTGTTGTCATGATAGTCTTTTTTATTTTTTGGACCCCATACAACCTCGTTCTCCT 77991
Query 177029 ACTGTCTACCTTTCAC-GCAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTG 177086
|| ||| | |||||| ||| | || || ||| ||| | ||||| || ||
Sbjct 77990 TCTCTCTGCTTTTCACAGCA--CATTTTTGGAGAACAGCTGTCAACAGAGCAAACACCTG 77933
Query 177087 GACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTG 177146
||| |||| ||| | | || | | |||||||| ||||| | ||||||||| |
Sbjct 77932 GACCTGGCCATGCAGGTGACTGAGGTGATCGCCTACACCCACTGCTNTATCAACCCAATC 77873
Query 177147 ATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTAC 177206
||||| || || || || |||| ||| | | |||||| | ||| ||||||| |
Sbjct 77872 ATCTATGCCTTTGTTGGTGAGAGGTTCCGGAAACACCTTCGGCTCTTTTTCCACAGACAT 77813
Query 177207 GTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 177250
||||| ||||||||| | || ||||| || ||||| |||||||
Sbjct 77812 GTGGCAATCTACCTCGGGAAATACATTCCATTCCTTGCTGGTGA 77769
Score = 269 bits (298), Expect = 3e-67
Identities = 597/884 (68%), Gaps = 15/884 (2%)
Strand=Plus/Minus
Query 9487 CTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATTATTGTCATAAGATAC 9546
|| ||||| || |||| | ||||||| || | || ||| | || |||||| |||
Sbjct 78643 CTGGTGTTCATCATTGGCCTCCTGGGCAACATGGTGGTTGTGTTGATCCTCATAAAGTAC 78584
Query 9547 ATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTTGCTA 9606
| |||| || ||| | ||||| || | ||| | ||||||||||| |||||| ||||
Sbjct 78583 AGGAAGCTCCAAATTATGACTAATATCTACCTGCTCAACTTGGCAATTTCTGACCTGCTC 78524
Query 9607 TTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTATCATGATTGGACTTTT 9666
| | | || || | ||||| ||||| |||||| ||| | || | |||| ||| ||||
Sbjct 78523 TCTGTCTTCACCGTTCCATTCTGGATTCACTATGTTGTA-TGGA--ATGAGTGGTGTTTT 78467
Query 9667 GGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCCAGGTC 9726
|| | ||||||||||| || || | | |||| | | ||||||| || |
Sbjct 78466 GGCCACCACATGTGTAAACTGATCTCTGGGTTTTATTACCTTGCCTTGTACAGTGAGATA 78407
Query 9727 TTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAACTGCT 9786
|||| |||||||||||| ||| | |||||||| || || ||||| ||||||| |||
Sbjct 78406 TTTTTCATCATCCTGCTGACAATTGACAGGTACCTGGCCATTGTCCATGCTGTGTTTGCC 78347
Query 9787 TTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTATGTACCTGGTTTCTGGCA 9846
| || | || || || | || | | ||| | | ||||||| ||||||
Sbjct 78346 CTTAGAGCCCGGACTGTGACTTTTGCTACCATCACCAGCATCATTACCTGGGGACTGGCA 78287
Query 9847 GGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAGATGACAATGGTAGGG-- 9904
||| || | | ||||||||| |||| |||| |||||| || ||| || |
Sbjct 78286 GGGCTGGCAGCATTACCTGAATTTATCTTCCATGAGTCCCAAGACAGCATTGG-AGAGCC 78228
Query 9905 -TTCAGTGTGATCCTTACTACCCAGAGATGTCTACAA-ATGTTTGGAGGCGCGCCCACGT 9962
||| || | |||| ||||||||| | | || | |||| ||| ||| |
Sbjct 78227 TTTC--TGCGGTCCTCGTTACCCAGAGG-GAGAAGAAGACAGCTGGAAGCGTTTCCATGC 78171
Query 9963 TGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGGCTGTCTGCTACTA 10022
| | ||| ||| || || | | ||||| |||||||||| | ||||||| |
Sbjct 78170 TCTGAGAATGAATATCTTTGGTTTAGCCCTCCCTCTCCTCATTATGGTTATCTGCTATTC 78111
Query 10023 TGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACAAGGCCATCAGGCT 10082
| ||| || | || ||| |||| |||||| || || ||| ||||||||||| ||||
Sbjct 78110 AGGAATCATTAAAACTCTGCTGAGATGCCCCAATAAAAAAAAGCACAAGGCCATCCGGCT 78051
Query 10083 CATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACAACATTGTTCTCCT 10142
|| ||||| ||||| | | || |||| |||||||||| || |||||| | ||||||||
Sbjct 78050 TATTTTTGTTGTCATGATAGTCTTTTTTATTTTTTGGACCCCATACAACCTCGTTCTCCT 77991
Query 10143 ACTGTCTACCTTTCAC-GCAACCCTTCTTAACCTGCAG-TGTGCATTGAGCAGTAACTTG 10200
|| ||| | |||||| ||| | || || ||| ||| | ||||| || ||
Sbjct 77990 TCTCTCTGCTTTTCACAGCA--CATTTTTGGAGAACAGCTGTCAACAGAGCAAACACCTG 77933
Query 10201 GACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTGCATCAACCCAGTG 10260
||| |||| ||| | | || | | |||||||| ||||| | ||||||||| |
Sbjct 77932 GACCTGGCCATGCAGGTGACTGAGGTGATCGCCTACACCCACTGCTNTATCAACCCAATC 77873
Query 10261 ATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTTCTTCCACACCTAC 10320
||||| || || || || |||| ||| | | |||||| | ||| ||||||| |
Sbjct 77872 ATCTATGCCTTTGTTGGTGAGAGGTTCCGGAAACACCTTCGGCTCTTTTTCCACAGACAT 77813
Query 10321 GTGGCCATCTACCTCTGCAAGTACATCCCCTTCCTGTCTGGTGA 10364
||||| ||||||||| | || ||||| || ||||| |||||||
Sbjct 77812 GTGGCAATCTACCTCGGGAAATACATTCCATTCCTTGCTGGTGA 77769
>seq73029
Length=1854
Score = 143 bits (158), Expect = 3e-29
Identities = 128/161 (80%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
|||||||||| ||| || | |||||| || ||||||| |||||||| ||||||||||||
Sbjct 1549 AGGCCCGTGATGTGTGCAATCATGTANGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 1490
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| ||||| ||||| || || || | |||||| |||||||| || |||||||| | ||
Sbjct 1489 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACC 1430
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910
|| ||||| || || ||| ||||| || ||||| |||||
Sbjct 1429 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCAT 1389
>seq87169
Length=633259
Score = 122 bits (134), Expect = 1e-22
Identities = 123/159 (77%), Gaps = 7/159 (4%)
Strand=Plus/Minus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
|||||| |||| | ||||||||| || ||||| || ||||||||||||| | |||
Sbjct 195124 CAGCGCTGCAGCTGCCTCCTGAGGGTCTTCAGCTTCTCTCCCAGGGAGTTCAAATGCTCC 195065
Query 138142 TT--TTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACT 138199
|| || |||| || ||||| || |||||||||||||| || ||||||||||||
Sbjct 195064 TTGATTTCTGG-----GCCATGGTTTTCTGCCTGGGGCATCACTTCTACCAGGTAAAACT 195010
Query 138200 GGATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
||||||| || || | ||| ||||| |||| ||||||||
Sbjct 195009 GGATCATTTCTGATAAGGCTTGGCAACCCAAGTAACCCT 194971
Score = 105 bits (116), Expect = 8e-18
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 137924 AGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTCGC 137983
|||||||||| | |||||||||| || |||||| |||| |||||||||||||| ||
Sbjct 197259 AGTTTTTCATTCTGATGGTCATGTACGCTTCTATGCAGTTGATGAAGATGTCAAATTCAT 197200
Query 137984 TCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
|||||||||||||||| ||||| || |||||||
Sbjct 197199 TCATGGCCTTGTAGACGCCTTTCTCTTGGAGCT 197167
>seq78026
Length=10422
Score = 109 bits (120), Expect = 6e-19
Identities = 172/242 (71%), Gaps = 12/242 (5%)
Strand=Plus/Plus
Query 10057 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 10116
||||||| | ||| ||| | ||||| ||||||| ||||||| | | ||| ||| | ||
Sbjct 3390 AAGAAGAGGCACAGGGCTGTGAGGCTTATCTTTGCCATCATGATTGTCTACTTTCTCTTC 3449
Query 10117 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-ACCT 10175
||||| ||||||||||| |||||| | ||| |||||| || | | |||||| ||
Sbjct 3450 TGGACTCCCTACAACATCGTTCTCTTCCTGAATACCTTCCAGGAA----TTCTTAGGACT 3505
Query 10176 G-----CAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTA 10230
| | ||||| |||| || | |||| ||| ||| ||| | | ||| | || |
Sbjct 3506 GAGTAACTGTGTG-ATTG-CCAATCACTTAGACCAGGCCATGCAGGTGACAGAGACTCTT 3563
Query 10231 GCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGA 10290
| |||||||| ||||| ||||| || ||||| || || || ||||||||||| ||
Sbjct 3564 GGAATGACACACTGCTGCATTAACCCTGTCATCTATGCCTTTGTTGGGGAGAAGTTCCGA 3623
Query 10291 AG 10292
||
Sbjct 3624 AG 3625
Score = 109 bits (120), Expect = 6e-19
Identities = 172/242 (71%), Gaps = 12/242 (5%)
Strand=Plus/Plus
Query 176943 AAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTT 177002
||||||| | ||| ||| | ||||| ||||||| ||||||| | | ||| ||| | ||
Sbjct 3390 AAGAAGAGGCACAGGGCTGTGAGGCTTATCTTTGCCATCATGATTGTCTACTTTCTCTTC 3449
Query 177003 TGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTA-ACCT 177061
||||| ||||||||||| |||||| | ||| |||||| || | | |||||| ||
Sbjct 3450 TGGACTCCCTACAACATCGTTCTCTTCCTGAATACCTTCCAGGAA----TTCTTAGGACT 3505
Query 177062 G-----CAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTA 177116
| | ||||| |||| || | |||| ||| ||| ||| | | ||| | || |
Sbjct 3506 GAGTAACTGTGTG-ATTG-CCAATCACTTAGACCAGGCCATGCAGGTGACAGAGACTCTT 3563
Query 177117 GCCTACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGA 177176
| |||||||| ||||| ||||| || ||||| || || || ||||||||||| ||
Sbjct 3564 GGAATGACACACTGCTGCATTAACCCTGTCATCTATGCCTTTGTTGGGGAGAAGTTCCGA 3623
Query 177177 AG 177178
||
Sbjct 3624 AG 3625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589196309526920
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