Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq58615 205 1e-47 seq75916 114 2e-20 seq97134 91.5 2e-13 >seq58615 Length=1894472 Score = 205 bits (226), Expect = 1e-47 Identities = 262/361 (73%), Gaps = 0/361 (0%) Strand=Plus/Minus Query 83033 TAGTAGCCGCGCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTC 83092 ||| |||||| | || ||| | |||||| || ||||| || || | | | | ||| Sbjct 970083 TAGGAGCCGCTAGGCTGCTGGGACAACAGGGCTTCTATGTCAGGTTCGATGTCGATGGTG 970024 Query 83093 TGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCG 83152 | | ||| |||||||||||||||| || ||||| | ||||||| ||||||||| Sbjct 970023 CGAAATCGGCGGCTGTACCTGCGCACTGGAACACCGTCGGGGCCCACCAGGAACTTCTCA 969964 Query 83153 AAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTC 83212 ||||||||||| | ||||||||||||||| |||||||| ||| | ||||||| || Sbjct 969963 AAGTTCCAGGCAATGTCGTTGCGGCACACCGGAGACCAAATGATGTTTTTGGGGTCGGTC 969904 Query 83213 ACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272 | ||||| | ||||| || ||||| |||| || ||| || ||||||| |||||| Sbjct 969903 ATGAGCGCAGTGGGCTCGTCACTGGGCGCTGGCAAGGACTCCCGCAGGAAGGTAAAGAGC 969844 Query 83273 GGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAG 83332 || || ||| | |||| || ||||||||||| ||||| | ||||||| || ||||| Sbjct 969843 GGGTGAGCCTTCTCACCATTCACCTCGCACTTTTCGAACAATGTAAAGTTGGGTTCGAAC 969784 Query 83333 CCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCC 83392 || || || |||| | ||| |||||| || ||||| | |||| ||| || ||| Sbjct 969783 CCCCCACCGGGTCGGATATACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGCATTCTCC 969724 Query 83393 T 83393 | Sbjct 969723 T 969723 Score = 165 bits (182), Expect = 1e-35 Identities = 176/231 (76%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || |||||||| || ||||| | ||| || || | || |||| Sbjct 969505 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCATCAGGCCACGGGGCCCGAGGC 969446 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||| |||||||||| ||||| |||||| ||| | |||||||||||||| | Sbjct 969445 GTCTCTGCAGATCGTTCATCTCGGTGTAGTCCCGGGTCGTTGTGCCTCAGAGGGACGCGA 969386 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||||||||||| ||| |||||| | | |||| | ||||||||| || || || | Sbjct 969385 CATTCTCGATGAGCAGCACCATGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCCG 969326 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCT---CTGCCGCGG 83618 | |||||| || || ||||| ||||| | ||| || ||||||||| Sbjct 969325 CCAGCGGGCGCGCGGAAAAGGCATACACGG---TGGACTGCGCTGCCGCGG 969278 >seq75916 Length=397495 Score = 114 bits (126), Expect = 2e-20 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 50466 TGCTCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACT 50525 |||| ||| || |||| || |||||||| || |||||||||| || ||| | ||||| Sbjct 163287 TGCTTGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACT 163228 Query 50526 GCTACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCAC 50584 || ||||||| |||||||| |||| || ||||| ||| | | || |||| ||| Sbjct 163227 GCAGCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCTGCCCGCATCAGGCTGATCCGCCAC 163169 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 ||||||||| |||| |||| ||| ||||| |||||||||| ||||| || Sbjct 163168 TATGTGCAGCTGCTCTACCCTCGGGCCAAGAACGACCGCGTGTGGACTCTGGAGTTCGTG 163109 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGC 50671 | |||||||||||||| |||||| Sbjct 163108 GGCAAGCTGGACGAGCGCTGTCGGCGC 163082 >seq97134 Length=536475 Score = 91.5 bits (100), Expect = 2e-13 Identities = 219/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||||||||| | | | ||| ||| || | ||||||| | || | ||| || Sbjct 309896 GATGTCGGGCTCAATGTTGATGGTTTGGAAGGTGCGGCTGTAGCGTCGGAACGGCTCCCC 309955 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | || | | ||||||||| |||||||||||||| || ||||| ||||||| Sbjct 309956 TTCTGGCCCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACTGGACT 310015 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| ||||||| ||| ||| ||| ||| | | | ||| || ||| || || Sbjct 310016 CCACATGATGAGCTTGGGATCGGTCATGAGGGAGAACGGGTCATCATAAGGGTAAGGTAG 310075 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306 ||| ||| |||| |||| ||||| | | ||| || |||||||| ||||| | Sbjct 310076 CTTGTCTTTCAGGTAGGCAAAGACAGGATGCTCATTCTGC-CCATTGACCTCACACTTTT 310134 Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366 | || | ||| | |||| ||| || |||||| ||||| | ||| ||| || Sbjct 310135 GGGTAAGATTGAAGGTGGGCTGGAACCCACCCCCAGGGCGGACATACTTGAGGCTGTTCA 310194 Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 |||||| | ||||| ||| |||||| Sbjct 310195 GGATCTCCTCGTTCTGACAGTTCTCCTGG 310223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 607888376244920