Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq58615 205 1e-47
seq75916 114 2e-20
seq97134 91.5 2e-13
>seq58615
Length=1894472
Score = 205 bits (226), Expect = 1e-47
Identities = 262/361 (73%), Gaps = 0/361 (0%)
Strand=Plus/Minus
Query 83033 TAGTAGCCGCGCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTC 83092
||| |||||| | || ||| | |||||| || ||||| || || | | | | |||
Sbjct 970083 TAGGAGCCGCTAGGCTGCTGGGACAACAGGGCTTCTATGTCAGGTTCGATGTCGATGGTG 970024
Query 83093 TGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCG 83152
| | ||| |||||||||||||||| || ||||| | ||||||| |||||||||
Sbjct 970023 CGAAATCGGCGGCTGTACCTGCGCACTGGAACACCGTCGGGGCCCACCAGGAACTTCTCA 969964
Query 83153 AAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTC 83212
||||||||||| | ||||||||||||||| |||||||| ||| | ||||||| ||
Sbjct 969963 AAGTTCCAGGCAATGTCGTTGCGGCACACCGGAGACCAAATGATGTTTTTGGGGTCGGTC 969904
Query 83213 ACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272
| ||||| | ||||| || ||||| |||| || ||| || ||||||| ||||||
Sbjct 969903 ATGAGCGCAGTGGGCTCGTCACTGGGCGCTGGCAAGGACTCCCGCAGGAAGGTAAAGAGC 969844
Query 83273 GGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAG 83332
|| || ||| | |||| || ||||||||||| ||||| | ||||||| || |||||
Sbjct 969843 GGGTGAGCCTTCTCACCATTCACCTCGCACTTTTCGAACAATGTAAAGTTGGGTTCGAAC 969784
Query 83333 CCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCC 83392
|| || || |||| | ||| |||||| || ||||| | |||| ||| || |||
Sbjct 969783 CCCCCACCGGGTCGGATATACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGCATTCTCC 969724
Query 83393 T 83393
|
Sbjct 969723 T 969723
Score = 165 bits (182), Expect = 1e-35
Identities = 176/231 (76%), Gaps = 6/231 (3%)
Strand=Plus/Minus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || |||||||| || |||||||| || ||||| | ||| || || | || ||||
Sbjct 969505 CCTGATGTCCGAACTGATTGCACGGGAAACCGAGCACCATCAGGCCACGGGGCCCGAGGC 969446
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
| | |||||| |||||||||| ||||| |||||| ||| | |||||||||||||| |
Sbjct 969445 GTCTCTGCAGATCGTTCATCTCGGTGTAGTCCCGGGTCGTTGTGCCTCAGAGGGACGCGA 969386
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
| ||||||||||||| ||| |||||| | | |||| | ||||||||| || || || |
Sbjct 969385 CATTCTCGATGAGCAGCACCATGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCCG 969326
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCT---CTGCCGCGG 83618
| |||||| || || ||||| ||||| | ||| || |||||||||
Sbjct 969325 CCAGCGGGCGCGCGGAAAAGGCATACACGG---TGGACTGCGCTGCCGCGG 969278
>seq75916
Length=397495
Score = 114 bits (126), Expect = 2e-20
Identities = 151/207 (73%), Gaps = 2/207 (1%)
Strand=Plus/Minus
Query 50466 TGCTCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACT 50525
|||| ||| || |||| || |||||||| || |||||||||| || ||| | |||||
Sbjct 163287 TGCTTGTGCACCTGTTCCCGGAGCTCTTCACCCACGAGAACCTGCGCAAGCAGTACAACT 163228
Query 50526 GCTACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCAC 50584
|| ||||||| |||||||| |||| || ||||| ||| | | || |||| |||
Sbjct 163227 GCAGCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCTGCCCGCATCAGGCTGATCCGCCAC 163169
Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644
||||||||| |||| |||| ||| ||||| |||||||||| ||||| ||
Sbjct 163168 TATGTGCAGCTGCTCTACCCTCGGGCCAAGAACGACCGCGTGTGGACTCTGGAGTTCGTG 163109
Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGC 50671
| |||||||||||||| ||||||
Sbjct 163108 GGCAAGCTGGACGAGCGCTGTCGGCGC 163082
>seq97134
Length=536475
Score = 91.5 bits (100), Expect = 2e-13
Identities = 219/329 (67%), Gaps = 2/329 (1%)
Strand=Plus/Plus
Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127
|||||||||||| | | | ||| ||| || | ||||||| | || | ||| ||
Sbjct 309896 GATGTCGGGCTCAATGTTGATGGTTTGGAAGGTGCGGCTGTAGCGTCGGAACGGCTCCCC 309955
Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187
|| | || | | ||||||||| |||||||||||||| || ||||| |||||||
Sbjct 309956 TTCTGGCCCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACTGGACT 310015
Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247
||| ||||||| ||| ||| ||| ||| | | | ||| || ||| || ||
Sbjct 310016 CCACATGATGAGCTTGGGATCGGTCATGAGGGAGAACGGGTCATCATAAGGGTAAGGTAG 310075
Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306
||| ||| |||| |||| ||||| | | ||| || |||||||| ||||| |
Sbjct 310076 CTTGTCTTTCAGGTAGGCAAAGACAGGATGCTCATTCTGC-CCATTGACCTCACACTTTT 310134
Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366
| || | ||| | |||| ||| || |||||| ||||| | ||| ||| ||
Sbjct 310135 GGGTAAGATTGAAGGTGGGCTGGAACCCACCCCCAGGGCGGACATACTTGAGGCTGTTCA 310194
Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGG 83395
|||||| | ||||| ||| ||||||
Sbjct 310195 GGATCTCCTCGTTCTGACAGTTCTCCTGG 310223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 607888376244920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |