Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq66478 138 1e-27 seq97228 105 7e-18 seq75922 102 8e-17 seq44856 95.1 1e-14 seq14694 93.3 4e-14 seq7963 91.5 2e-13 seq7954 84.2 2e-11 >seq66478 Length=146994 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||| |||| ||| | || || || || ||||| ||||||||| | || || || || Sbjct 11011 AAAATGAAAATCTTCATGAAGACCCTGACCGGCAAGACCATCACCCTNGAGGTGGAGCCC 11070 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | | | | |||||| || || | || ||||||| ||||||| | ||| Sbjct 11071 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGACATCCCCCCTGAC 11130 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| |||||||||| || ||||| |||||| | || | |||| || |||||| Sbjct 11131 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGAAAGATGGCTGCACTCTTTCTGACTAC 11190 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||| ||| |||| ||||| || || || || |||| || ||| Sbjct 11191 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCTTCCGTCTGAGAGGTGGC 11241 Score = 123 bits (136), Expect = 3e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 11242 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTGGATCCCAGT 11301 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | | ||||||| ||||||| | |||||| Sbjct 11302 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGGTAAAGAGGACATCCCCCCTGACCAG 11361 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || |||||||||| || ||||| |||||||| || | |||| || ||||||||| Sbjct 11362 CAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCTGCACTCTTTCTGACTACAAC 11421 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| ||||| Sbjct 11422 ATCCAGAAAGAGTCCACCCTGCA 11444 >seq97228 Length=228612 Score = 105 bits (116), Expect = 7e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || | ||| ||||||||||| |||| || ||| || Sbjct 211563 AAGATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCC 211622 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | || ||||| || || || | || Sbjct 211623 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 211682 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| | || |||| ||| || || |||||||| || | || || | |||||| Sbjct 211683 CAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 211742 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || ||||| |||||| Sbjct 211743 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 211778 >seq75922 Length=371470 Score = 102 bits (112), Expect = 8e-17 Identities = 164/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || ||| | || || || || |||| ||||||||| | || || || || Sbjct 193960 AAAATGCAGATCTTCATGAAGACCCTGACCAGCAAGACCATCACCCTGGAAGTGGAGCCC 193901 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG----- 40801 | ||| | | | | |||||| || || | || || |||||||||||| Sbjct 193900 AGTGACTCCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCTCTCC 193841 Query 40802 CGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 40861 | ||||| || | || |||| || ||||| |||||||| || | ||||| || | Sbjct 193840 CCGACCAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTG 193781 Query 40862 ACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | |||||||||||||| ||| |||| ||||| || || | || ||||||| ||| Sbjct 193780 ATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 193725 >seq44856 Length=74269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 101/129 (78%), Gaps = 6/129 (5%) Strand=Plus/Plus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTC-GGGCAGTTTCGCCGCCATATTT 117100 ||||||||||||| || || || ||||| ||||| || ||| |||| || || ||||| Sbjct 50627 TGGTGGCCTTCGCTGCTGTGGAAGGCGTTTTCTTCTCTGGGTCGTTT-GCTGCTATATTC 50685 Query 117101 TGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGAC--TTTCAGCAACGAGCTCATCTCCA 117158 ||||| ||||| | ||||||||||| || || || ||||| || ||||||||| || Sbjct 50686 TGGCTGAAGAAGAGAGGCCTCATGCCTGGACTCACCTTTTCA--AATGAGCTCATCAGCA 50743 Query 117159 GGGACGAGG 117167 |||| |||| Sbjct 50744 GGGATGAGG 50752 >seq14694 Length=1798513 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||||||||| || ||||| || || ||||||| || ||| ||| || | ||||| | Sbjct 774221 TGGTGGCCTTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCT 774162 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 ||||||||||||| || || ||||| ||||| || || ||| ||||| || ||| | Sbjct 774161 GGCTCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAATGAGCTTATTAGCAGAG 774102 Query 117162 ACGAGG 117167 |||||| Sbjct 774101 ACGAGG 774096 >seq7963 Length=681008 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || |||||||||||| |||||||||| | ||||||| || |||| ||||| || Sbjct 61016 GATAAGGAGGGCATCCCCCCGGACCAGCAGAGGCTCATCTTTGCCNGCAAGCAGCTAGAA 60957 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || || |||||||||||||| ||| |||| ||| | || || | Sbjct 60956 GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCCTGTACCTGGTCCTC 60897 Query 40903 CGCTTGAGGGGCGGC 40917 || ||||||| ||| Sbjct 60896 CGTCTGAGGGGTGGC 60882 >seq7954 Length=808569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||| | || || || || || | || || ||||||||||| |||| || ||| || Sbjct 793639 AAGATGGAGATTTTTGTGAAGACCTTTACAGGGAAAACCATCACGCTCGAGGTTGAACCC 793698 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | |||| | ||| | |||| || || | || || || || || || | || Sbjct 793699 TCAGACACTATAGAAAATTTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 793758 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| | || |||| ||| || || |||||||| || | || || | |||||| Sbjct 793759 CAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 793818 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 | ||| || |||||| |||| || ||||| |||||| Sbjct 793819 AGCATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 793854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514450409230480