Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq97228 100 2e-16 >seq97228 Length=228612 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | || ||||| |||||||||||||| || Sbjct 211793 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 211734 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || |||||| |||| || | |||||||| ||||| Sbjct 211733 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 211674 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || || || || || || || || | ||| | ||||||| | || || Sbjct 211673 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 211614 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||||| || | || || || || ||||||||||| Sbjct 211613 CTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433199238182116