Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq66478 111 2e-19
seq78627 105 8e-18
seq7994 102 9e-17
seq117011 100 3e-16
seq27479 100 3e-16
seq108018 98.7 1e-15
seq35323 98.7 1e-15
seq75927 91.5 2e-13
seq7954 87.8 2e-12
>seq66478
Length=146994
Score = 111 bits (122), Expect = 2e-19
Identities = 164/233 (70%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016
|| ||||| | ||| || |||| |||| ||| ||| || || || ||||| ||||
Sbjct 11240 CCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAA 11181
Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076
||||| | | || | |||||||| ||||| || ||||||||||||||||| | ||
Sbjct 11180 AGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGG 11121
Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136
| | ||| || ||| ||| || |||| || | | ||||| || | |||||
Sbjct 11120 ATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACC 11061
Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189
|| | |||||||| ||||| || || ||||| | ||||||| |||||| ||
Sbjct 11060 TCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTTGAC 11008
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040
|||| ||| ||| || || || ||||| |||| ||||| | | || || ||||||
Sbjct 11444 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGC 11385
Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100
|| ||||| || ||||||||||||||||| | || | | ||| || || ||| ||
Sbjct 11384 TTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTG 11325
Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160
|||| || | | ||||| || | ||||| || | |||||||| ||||| ||
Sbjct 11324 GCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTC 11265
Query 43161 AGCGTCTTTACAAAGATTTGCAT 43183
|| ||||| |||||||| |||||
Sbjct 11264 AGGGTCTTCACAAAGATCTGCAT 11242
>seq78627
Length=1950313
Score = 105 bits (116), Expect = 8e-18
Identities = 70/78 (90%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 538498 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 538557
Query 60124 TATACTACCGAGGATTGA 60141
||||||| |||||| |||
Sbjct 538558 TATACTAACGAGGAGTGA 538575
>seq7994
Length=453558
Score = 102 bits (112), Expect = 9e-17
Identities = 67/74 (91%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 9218 TCTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 9159
Query 60125 ATACTACCGAGGAT 60138
|||||| || ||||
Sbjct 9158 ATACTAACGGGGAT 9145
>seq117011
Length=451335
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 277521 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 277580
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 277581 ATACTAACGAGGA 277593
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 236057 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 235998
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 235997 TACTAACGAGGA 235986
>seq27479
Length=274127
Score = 100 bits (110), Expect = 3e-16
Identities = 66/73 (90%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 32468 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 32409
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 32408 ATACTAACGAGGA 32396
>seq108018
Length=242351
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 191687 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 191628
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 191627 TACTAACGAGGA 191616
>seq35323
Length=73809
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
|||||||| | ||||||||||||| ||| ||||||||||||||||| ||||||||||||
Sbjct 64 TCTCCTCGTCGGGGAATCGAACCCCGGTNTCCCGCGTGACAGGCGGGGATACTCACCACT 123
Query 60125 ATACTACCGAGGAT 60138
|||||| || ||||
Sbjct 124 ATACTAGCGGGGAT 137
>seq75927
Length=353701
Score = 91.5 bits (100), Expect = 2e-13
Identities = 64/73 (88%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 158940 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 158999
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 159000 ATACTAACGAGGA 159012
>seq7954
Length=808569
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 42971 CAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTC 43030
|||||| | ||| | ||| |||||||||||| |||| |||| || ||| || | ||
Sbjct 793854 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGGCCATC 793795
Query 43031 ATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 43090
|| ||||||||||||||||| || || | ||||| || | || | | ||||| ||
Sbjct 793794 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 793735
Query 43091 CATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT 43150
| ||| || || | | | | ||||| | ||| || |||| |||||||||
Sbjct 793734 CTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 793675
Query 43151 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
||| || || | ||||| ||||| || | ||| ||
Sbjct 793674 TTTCCCTGTAAAGGTCTTCACAAAAATCTCCATCTT 793639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570964355220440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |