Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq97228 84.2 3e-11 >seq97228 Length=228612 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | || || || ||| || || || || || || Sbjct 211792 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 211734 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | || ||| || | || || ||||| || |||| ||||||||||| ||||| Sbjct 211733 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 211674 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||||||||| || Sbjct 211673 AATTCCTTCTTTATCCTG 211656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 742416937788160