Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq66478 93.3 3e-14
seq75922 89.7 3e-13
>seq66478
Length=146994
Score = 93.3 bits (102), Expect = 3e-14
Identities = 151/216 (70%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 34174 CCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTC 34233
|||||| ||| |||| | || |||||||| ||||||||||| || || | | |
Sbjct 11456 CCTCAG-ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCC 11398
Query 34234 GTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTT 34293
|| |||| ||||||||| || || ||||| ||||||||||| ||| | | ||| ||
Sbjct 11397 ATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTT 11338
Query 34294 GTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353
| ||||| ||| | || | || | || | | || || |||| |||||
Sbjct 11337 ACCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGAT 11278
Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
||| ||||| || || || |||||||||||||||||
Sbjct 11277 GGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 11242
>seq75922
Length=371470
Score = 89.7 bits (98), Expect = 3e-13
Identities = 150/217 (69%), Gaps = 5/217 (2%)
Strand=Plus/Plus
Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237
|| |||||||| | || |||||||| |||||||| || || || ||| | ||
Sbjct 193741 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 193800
Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG-----ACGGGCACGCTCTCCT 34292
|||| ||||||||| || || || |||| ||| |||||| | ||| | || |||||
Sbjct 193801 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCT 193860
Query 34293 TGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGA 34352
| || ||||| ||| | || | || || || | | || || |||| ||||
Sbjct 193861 TATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGA 193920
Query 34353 TGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|||| |||| ||| || || |||| |||||||||||
Sbjct 193921 TGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 193957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 322601975974880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |