Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq66478 93.3 3e-14 seq75922 89.7 3e-13 >seq66478 Length=146994 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 34174 CCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTC 34233 |||||| ||| |||| | || |||||||| ||||||||||| || || | | | Sbjct 11456 CCTCAG-ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCC 11398 Query 34234 GTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTT 34293 || |||| ||||||||| || || ||||| ||||||||||| ||| | | ||| || Sbjct 11397 ATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTT 11338 Query 34294 GTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGAT 34353 | ||||| ||| | || | || | || | | || || |||| ||||| Sbjct 11337 ACCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGAT 11278 Query 34354 GGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| ||||| || || || ||||||||||||||||| Sbjct 11277 GGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 11242 >seq75922 Length=371470 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/217 (69%), Gaps = 5/217 (2%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || |||||||| |||||||| || || || ||| | || Sbjct 193741 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 193800 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCG-----ACGGGCACGCTCTCCT 34292 |||| ||||||||| || || || |||| ||| |||||| | ||| | || ||||| Sbjct 193801 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCT 193860 Query 34293 TGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGA 34352 | || ||||| ||| | || | || || || | | || || |||| |||| Sbjct 193861 TATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGA 193920 Query 34353 TGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||| ||| || || |||| ||||||||||| Sbjct 193921 TGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 193957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322601975974880