Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq44856 107 2e-18 seq14694 95.1 1e-14 >seq44856 Length=74269 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || ||||||||| | | | || ||| |||| | Sbjct 58129 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATGACTGCAAAAC 58070 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| ||| ||||| || ||||||||||||||||| |||||||| ||||| |||| Sbjct 58069 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTT 58010 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 58009 CCATAAAATCAAAGGGATTTTCTG 57986 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/130 (75%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 ||||||||| |||| || ||||| |||||||||||||| ||||| |||||||||| | Sbjct 45542 TTTTCTTTGG-ATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAATGAACA 45484 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT-CAGA 16605 ||||| || || ||||| ||||| || || | ||| || | | || |||| | || Sbjct 45483 TTCTCGATCAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACTTCCTGA 45424 Query 16606 GTAAAACCTT 16615 |||||| || Sbjct 45423 CTAAAACGTT 45414 >seq14694 Length=1798513 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945 ||| |||||| ||| | | ||| ||| ||| || | | ||||| || ||| | Sbjct 772101 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTGTTGAACTCGACATCACCCCCATCCT 772160 Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005 || ||||| | |||| ||| |||||||| ||||| |||||||||| |||||||||||| Sbjct 772161 CTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTC 772220 Query 16006 CATAAAATCAAAAGGATTTT 16025 ||| || ||||| ||||||| Sbjct 772221 CATGAAGTCAAATGGATTTT 772240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461821856937800