Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq44856 107 2e-18
seq14694 95.1 1e-14
>seq44856
Length=74269
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||| | | || ||||||||| | | | || ||| |||| |
Sbjct 58129 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATGACTGCAAAAC 58070
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| ||| ||||| || ||||||||||||||||| |||||||| ||||| ||||
Sbjct 58069 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTT 58010
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 58009 CCATAAAATCAAAGGGATTTTCTG 57986
Score = 84.2 bits (92), Expect = 2e-11
Identities = 98/130 (75%), Gaps = 2/130 (2%)
Strand=Plus/Minus
Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546
||||||||| |||| || ||||| |||||||||||||| ||||| |||||||||| |
Sbjct 45542 TTTTCTTTGG-ATCTCTGATGTAAGTGTCTATTAGTAAACTGTACATCTCTGAATGAACA 45484
Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTT-CAGA 16605
||||| || || ||||| ||||| || || | ||| || | | || |||| | ||
Sbjct 45483 TTCTCGATCAGAATTTGAAAGCCATAGAAACAGCGAGCCTCTGGAACCTGCACTTCCTGA 45424
Query 16606 GTAAAACCTT 16615
|||||| ||
Sbjct 45423 CTAAAACGTT 45414
>seq14694
Length=1798513
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTTT 15945
||| |||||| ||| | | ||| ||| ||| || | | ||||| || ||| |
Sbjct 772101 TTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTGTTGAACTCGACATCACCCCCATCCT 772160
Query 15946 TTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTC 16005
|| ||||| | |||| ||| |||||||| ||||| |||||||||| ||||||||||||
Sbjct 772161 CTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTC 772220
Query 16006 CATAAAATCAAAAGGATTTT 16025
||| || ||||| |||||||
Sbjct 772221 CATGAAGTCAAATGGATTTT 772240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 461821856937800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |