Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq34769 1200 0.0
seq87223 127 1e-24
seq7953 123 2e-23
>seq34769
Length=1374272
Score = 1200 bits (1330), Expect = 0.0
Identities = 1053/1307 (81%), Gaps = 6/1307 (0%)
Strand=Plus/Minus
Query 107333 GAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGT 107392
|| |||||| || || | ||||| ||||| | ||||||||||| ||||||||||| ||
Sbjct 613987 GAGGAAGCTCTGTTGGCGCTATCATGTGTGGACTCTGGGCTGCTACATGCTGCTGGCTGT 613928
Query 107393 TGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTC 107452
|| | |||| ||| || ||||| | | |||||| | ||| | |||||||||| ||
Sbjct 613927 CATTGCCCTGAAACTGTCTCTCAGACTGAGATGTGACTTCGATGTCATGGATCTGGACTC 613868
Query 107453 CAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGC 107512
| ||| || | || ||| |||| |||||| | ||||||| | |||||||||||||||
Sbjct 613867 GAAGGAATTTCGAAGCCAGTACTGCAGGGACTTCCTGTACAAGACCCTGAAGCTGCCAGC 613808
Query 107513 AAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGC 107572
|||||| |||||||||||||||||| |||| |||||||| ||| |||||||| |||||||
Sbjct 613807 AAAGAGGTCCATCAACTGTTCTGGGGTCACTCGAGGGGAGCAGAAAGCAGTGATCCAGGC 613748
Query 107573 CCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCT 107632
|| || |||||||||| | ||||| |||||| ||| |||| | | | ||| |
Sbjct 613747 ACTGCTCAACAACCTGGAGATTAAGAAGAAGCGGCAGCCCTTCACAGAGGCTGACTACTT 613688
Query 107633 CAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACT 107692
| ||| || ||||||||||| |||||| || |||||||||||||||||||||| ||
Sbjct 613687 TAGCATGACAGCAGACTGTGAGCAATTCAAGACCAAAAGGAAGTTCATACAGTTCCCGCT 613628
Query 107693 GAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGA 107752
||| ||||||||| || ||||||||||| || || |||||||| || |||||||| ||
Sbjct 613627 GAGCAAAGAAGAGGCTGATTTCCCCATTGCGTATTCCATGGTGGTTCACGAGAAGATCGA 613568
Query 107753 AAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGT 107812
||||||||| ||||||||||||| || || ||||||||||||||||||||||||| ||
Sbjct 613567 GAACTTTGAAAGGCTGCTGCGAGCTGTATACACCCCTCAGAACATATACTGTGTCCATGT 613508
Query 107813 GGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCC 107872
|||| ||||||||||||||||||||| |||| |||| ||||||| | || ||||||||
Sbjct 613507 GGATCAGAAGTCCCCAGAGACTTTCAAGCAGGCAGTCAGGGCCATTGTGTCATGCTTCCC 613448
Query 107873 CAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCA 107932
||||||||| | || |||||| |||| | ||||| || || ||||||||||| |||||
Sbjct 613447 AAATGTCTTCTTAGCTAGTAAGCTGGTGTCAGTGGTCTACGCTTCCTGGTCCAGGGTGCA 613388
Query 107933 AGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACT 107992
|||||||||||||| ||||||||||||||||||||||| ||||||||||| ||| | ||
Sbjct 613387 GGCTGACCTGAACTGCATGGAAGACTTGCTCCAGAGCTCTGTGCCATGGAAATACCTCCT 613328
Query 107993 GAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAA 108052
||| || || ||||||||||| ||||| ||||||||||| |||||||||| |||||||||
Sbjct 613327 GAACACCTGTGGGACAGACTTTCCCATTAAGACCAATGCTGAGATGGTCCAGGCCCTCAA 613268
Query 108053 GATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTC- 108111
| | ||||| || ||||||| |||||||| |||||||| ||| || ||||| ||
Sbjct 613267 GCTATTGAATGGGCAGAACAGCATGGAGTCAGAGGTACCACCTGCA--CATAAAAAGTCC 613210
Query 108112 -GCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGAC 108170
|||||| ||| | ||||||||||| |||| | ||||| |||||||||| |||| |
Sbjct 613209 CGCTGGAGATATCACTATGAGGTGAAAGACGCGTTGTACATAACCAGCAAGAGGAAGACC 613150
Query 108171 CCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCC 108230
||||| ||| |||| || |||||||||||||||||||||| | || || ||||||| |
Sbjct 613149 CCTCCACCTAATAACATAACCATGTTCACAGGGAATGCCTACATGGTAGCTTCTCGAGAC 613090
Query 108231 TTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGAC 108290
|| || ||||||| ||| |||| | ||| ||||| ||| | |||||||| ||||||
Sbjct 613089 TTCATCGAACATGTATTAAGCAACTCCAAAGCCCAACAACTAATCGAATGGGTAAAAGAC 613030
Query 108291 ACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGC 108350
|||||||| || || |||||||| ||||||||||| |||||||| | |||||||||||
Sbjct 613029 ACCTATAGTCCTGATGAACACCTTTGGGCCACCCTCCAGCGTGCCTCATGGATGCCTGGA 612970
Query 108351 TCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTC 108410
|| ||||| |||| ||| | | || |||||||||||| | || || ||||| ||
Sbjct 612969 TCAGTTCCCTTGCACCACAAATTTGACCTCTCAGACATGAGATCTATTGCAAGGCTAATC 612910
Query 108411 AAGTGGCAGTACCACGAGGGAGA-TGTCAGCATGGGGGCGCCTTATGCACCCTGCTCTGG 108469
||||||||| ||||||||||||| | || || |||||||| || |||| ||||| ||
Sbjct 612909 AAGTGGCAGGACCACGAGGGAGACATTGAGGAT-GGGGCGCCCTACACACCTTGCTCAGG 612851
Query 108470 AATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAA 108529
|||||| | | ||||| |||| ||||| ||| | ||||||||| ||||||| || ||||
Sbjct 612850 AATCCACCAGCGGGCCGTCTGTATTTATGGGTCTGGGGACCTGCACTGGATACTGAAGAA 612791
Query 108530 CCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTT 108589
||||||||||||||| |||||||||||||| | |||||||||||| || || ||||| ||
Sbjct 612790 CCATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTTT 612731
Query 108590 AGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636
|||||| || ||||||| || |||||||| ||||||||||| ||||
Sbjct 612730 AGAAGAATATTTACGTCACAAAGCCATCTACGGGACTGAACTGTGAG 612684
>seq87223
Length=339319
Score = 127 bits (140), Expect = 1e-24
Identities = 570/886 (64%), Gaps = 29/886 (3%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || |||||||||||| ||||||| || ||||| || || || ||||| ||| | |||
Sbjct 189345 CCCCTTAGTAAAGAAGAGGTAGACTTTCCAATTGCATATTCCATAGTGGTTCATCACAAG 189404
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| |||| |||| ||| | ||| | ||| |||||||| | ||||| |
Sbjct 189405 ATTGAAATGCTTGATAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTACTGCATT 189464
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| ||||| || | || | || || || || | || |||| ||||||
Sbjct 189465 CATGTGGACAAAAAAGCAGAGGAATCCTTTTTAGCTGCAGTGATGGGCATTGCATCCTGC 189524
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|| |||||||| ||||||| |||||| || |||||||| |||||| |
Sbjct 189525 TTTGATAATGTCTTTGTGGCCAGCCAGTTGGAGAATGTTGTTTATGCATCCTGGAGTCGG 189584
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
|| || |||||||| ||||||||| | ||| || | ||| | ||||| | |||||||
Sbjct 189585 GTTCAGGCTGACCTCAACTGTATGAAGGACCTG-TATAGAA-TGAGTGCAAACTGGAAGT 189642
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045
|||| | ||| || || | || ||||| || || ||||| || || ||| |
Sbjct 189643 ACTTGATCAATCTTTGTGGTATGGATTTCCCTATCAAAACCAACCTAGAAATTGTCAGGA 189702
Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaa 108105
|||||| | |||| |||||| | || ||||| || || |||
Sbjct 189703 AGCTCAAGTCACTCTCGGGTGAGAACAACCTAGAAACTGAGAAGATGCCTCAGAACAAGG 189762
Query 108106 aaaaTCGCTGGAAATACCGCTATGA----GGTGACAGACACACTGTACCCTACCA----G 108157
| | | |||||| | || || | | |||| | | ||| ||| | || |
Sbjct 189763 AGGAAAGATGGAAAAAACGGTACGCCATCGTTGACGGGAAG-CTG-ACC--AACACGGGG 189818
Query 108158 CAAGATGAAGGACCCTCCCC-CTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTG 108216
|| ||| || | || || | || | || | || |||| | |||||| ||||
Sbjct 189819 GTAGTCAAAGCGCCACCTCCACTCAAAACT--CCTCTTTTTTCAGGCAGTGCCTACTTTG 189876
Query 108217 TGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGTT 108275
| | | | | | | | | |||| |||| || || |||| |||| | |
Sbjct 189877 TAGTCAGTAGGGAATATATAGGCTATGTGCTAGAAAATGAAAATATCCAAAAGT-TCATG 189935
Query 108276 GAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCT 108335
|| |||| | ||||| || ||||| || || ||||||||||||| | ||| | | |
Sbjct 189936 GAGTGGGCACAGGACACATACAGCCCGGATGAGTACCTCTGGGCCACTATCCAGAG-GAT 189994
Query 108336 CCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGAC 108391
|| | | | ||||| ||| | || ||||| |||||| || | || |||||||
Sbjct 189995 CCCCGAAGTCCCTGGTTCTCTCCCCTCAAGCCAT---AAGTATGACTTGTCTGACATGAA 190051
Query 108392 TGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCC 108451
||| | || ||| | ||||||||||||||| || || ||||| || || || ||
Sbjct 190052 TGCTGTTGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAAGGCGCTCC 190111
Query 108452 TTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCT 108511
||| |||| ||| || ||||| | | || |||| ||| ||| || || ||| |
Sbjct 190112 TTACCCACCGTGCAGCGGGGTCCATGTGCGCTCCGTCTGTGTTTTCGGAGCTGGTGACTT 190171
Query 108512 GTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557
| ||||| || | | || ||| | || || || |||||||||
Sbjct 190172 GCGGTGGATGCTTCGCACACACCACTTTTTCGCCAATAAGTTTGAC 190217
>seq7953
Length=820998
Score = 123 bits (136), Expect = 2e-23
Identities = 182/253 (72%), Gaps = 14/253 (6%)
Strand=Plus/Plus
Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841
||||||| ||||||| |||||||| || |||||| |||| | ||||||| |||||||
Sbjct 484636 ATGCCCC--AGAACATCTACTGTGTGCATGTGGATAGGAAGGCAACAGAGACCTTCAAAG 484693
Query 107842 AGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900
| || ||| || | ||| | ||| |||||||||| |||| ||||| |||| |||
Sbjct 484694 ATGCTGTCCAG-CAGTTACTAAGCTGTTTCCCCAATGCCTTCCTGGCCTCTAAGATGGAA 484752
Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960
|| || || |||| || ||| | | || |||||||||||||| ||| |||| ||
Sbjct 484753 CCCGTCGTCTATGGTGGCTTCTCCCGCCTCCAGGCTGACCTGAACTGCATGAAAGATNTG 484812
Query 107961 -----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCC 108015
||||| || || ||||||||||| | || || || || ||| |||||||
Sbjct 484813 GTGGCCTCCA-AG----GTCCCATGGAAGTATGTTCTCAACACCTGTGGGCAGGACTTCC 484867
Query 108016 CCATAAAGACCAA 108028
|| | || |||||
Sbjct 484868 CCCTGAAAACCAA 484880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347762118197802
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