Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq75922 95.1 1e-14
seq66478 95.1 1e-14
>seq75922
Length=371470
Score = 95.1 bits (104), Expect = 1e-14
Identities = 163/237 (69%), Gaps = 5/237 (2%)
Strand=Plus/Plus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| |||| | | |||| |||||| ||| ||| ||||| |||||||| ||
Sbjct 193725 GCCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 193784
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGG---- 45224
|| ||| | || ||||| || || ||||| || |||| || |||||||||||
Sbjct 193785 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAG 193844
Query 45225 -GAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCC 45283
| || | |||||||| ||| || || ||| || | | | | ||| | |
Sbjct 193845 AGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGC 193904
Query 45284 TCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||||| |||| ||| || ||||||| ||||| ||||||| ||||| ||||| |||
Sbjct 193905 TCCACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTTTG 193961
>seq66478
Length=146994
Score = 95.1 bits (104), Expect = 1e-14
Identities = 160/232 (69%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
||||||||||| | || |||| |||||| ||| ||| ||||| |||||||||||
Sbjct 11241 GCCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 11182
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| || | || | ||| || || || || || || | ||||| ||||| || ||
Sbjct 11181 AAGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 11122
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288
| |||| || ||| || || ||| || | | | | |||| | ||||||
Sbjct 11121 GATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 11062
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340
||| | ||| || |||||||| ||||| ||||||| ||||||| ||| |||
Sbjct 11061 CTCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTTG 11010
Score = 82.4 bits (90), Expect = 6e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
|||||| ||| ||| ||||| ||||||||||| || || | || ||||| ||
Sbjct 11445 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTG 11386
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
|| || || || || | ||||| ||||| || || | |||| || || || ||
Sbjct 11385 CTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTT 11326
Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312
||| || | | | | |||| | ||||| |||| ||| || |||||||| ||
Sbjct 11325 GGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGT 11266
Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337
||| |||||||||||||| ||||||
Sbjct 11265 CAGGGTCTTCACAAAGATCTGCATG 11241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394500421511833
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |