Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq73029 86.0 1e-11 >seq73029 Length=1854 Score = 86.0 bits (94), Expect = 1e-11 Identities = 98/130 (75%), Gaps = 4/130 (3%) Strand=Plus/Plus Query 35567 GATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTA 35624 ||||||| ||| ||||| || ||||| ||||| || | || ||||| ||||||| | Sbjct 1377 GATCTTCCCCTGATGGCACTGCCTCCTTGCCA--TGCCCTCTGTCAATTCTATGTGGTGA 1434 Query 35625 ATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCT 35684 |||| || |||| |||||| | || ||| | |||||| | || |||||||||||| Sbjct 1435 ATGGGGAGCTGTCTTGCCAGCTTTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCT 1494 Query 35685 TCAATATTGC 35694 |||| ||||| Sbjct 1495 TCAACATTGC 1504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988070464361215