Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq116961 116 5e-21 seq44403 116 5e-21 seq50462 111 2e-19 seq14694 95.1 2e-14 seq8036 84.2 3e-11 >seq116961 Length=993603 Score = 116 bits (128), Expect = 5e-21 Identities = 214/309 (69%), Gaps = 10/309 (3%) Strand=Plus/Minus Query 31351 ACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCA 31410 |||||| |||| |||||||| | || |||| | | || ||||| || || | ||| || Sbjct 255547 ACTTCT--AAGT-CTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCT 255491 Query 31411 GTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTA 31470 | || || | |||| | ||||||| ||||| || | || || | ||||| ||| Sbjct 255490 TTTTTCACTTCAAACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTA 255431 Query 31471 TAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGAC 31527 |||||||| ||||| ||||| |||||| ||| || | ||||| | || ||||| Sbjct 255430 TAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAA 255371 Query 31528 CTAGGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATT 31587 | ||||||| ||| |||||||| ||| | | || ||| ||||| || | Sbjct 255370 CCTGGAGCTACTCTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA-- 255313 Query 31588 AACTGTCGTTCTCCA--GGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCGG 31645 | || | ||||||| || ||||| |||||||| || || || |||| || || || | Sbjct 255312 CAATGGCTTTCTCCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCG 255253 Query 31646 CAGCACCCG 31654 |||||| || Sbjct 255252 CAGCACGCG 255244 >seq44403 Length=740699 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| || || |||||||| || |||||||| || ||||| | Sbjct 631769 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 631710 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 631709 GATTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 631650 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 631649 CTGTTTCTTACACCATA 631633 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681 Score = 95.1 bits (104), Expect = 2e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685 |||| || ||||| || || | || || ||||| | ||| || || || || || || | Sbjct 627708 CATACGTTTCATAAGGGCCATACTCCTTTGCTAGGTCACAGCTAGCTTCCAAAGCTCCAT 627649 Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745 ||||||| ||||||||||| | |||||| | || ||||| ||||| ||||| || | Sbjct 627648 AATAAATAGTTTCAAAGATTTGCTTATTCAATAACTGGGCTTCTGGGCTCTCAAAGGGGT 627589 Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805 | | | || || || || || |||| ||||| || ||||| || || || | ||| | Sbjct 627588 ATCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 627529 Query 62806 TCTTATTAGA 62815 ||||| || Sbjct 627528 GTTTATTTGA 627519 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | | || Sbjct 624566 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 624507 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 624506 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 624447 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| ||||| Sbjct 624446 AGGCTCCAGGTAAATGGC 624429 >seq50462 Length=1534 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 |||||||||||| ||| | | ||| | ||||| || || ||||||||||||| ||| Sbjct 163 GTTACTTTCTATAATGTGTTCCTGGTTCTGCAAGCCTTTATACTGACTACTGCAGTCTTT 222 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| ||||||| | | ||||||||| ||||||||||||||||| ||| ||| | |||| Sbjct 223 CTTGGTCTGACTGCCTATACTCTACAGTCAAAGAGAGATTTCAGCAAATTTGGAGCAGG 281 >seq14694 Length=1798513 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/145 (75%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 33230 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 33285 |||| ||| || ||| |||| || | |||| ||| ||| |||| ||||| || | Sbjct 772095 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 772153 Query 33286 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33345 |||| | |||||||| ||||| || || || || || || || |||||||| | ||| | Sbjct 772154 CCATCCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 772213 Query 33346 TATTTTCCATGAAATCAAACGGATT 33370 ||||||||||||| ||||| ||||| Sbjct 772214 TATTTTCCATGAAGTCAAATGGATT 772238 >seq8036 Length=301664 Score = 84.2 bits (92), Expect = 3e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 188173 GCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCACA 188232 |||||||||||||||| ||||||||||| | ||||| ||||| || ||||||||||||| Sbjct 78828 GCTCCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCGGCCAGCGTGCACA 78769 Query 188233 TACGAATGG 188241 | || |||| Sbjct 78768 TCCGCATGG 78760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628877809795440