Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq8036 167 3e-36
seq50462 143 3e-29
seq44403 122 1e-22
seq14694 105 9e-18
seq116961 91.5 2e-13
>seq8036
Length=301664
Score = 167 bits (184), Expect = 3e-36
Identities = 154/195 (79%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286
||| || |||||| | |||||| || | | ||| |||| ||||||||||||||| ||
Sbjct 60223 TTACTTTTTATTAACTGCTTCCAGAAACCTCAGCAGGTGCAGGAACAGATTGATGATGTC 60282
Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346
|||||||| |||||| | |||| ||||| |||||||| || || | || || || ||
Sbjct 60283 CAAGTAGAGATTGATGGCAGCTAGTACATACTCTTCAGGAGACAGTCTGTGCATCAGCGA 60342
Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406
|||||| |||||||| |||||||| ||||| | |||||| || | || ||||| ||||||
Sbjct 60343 GTGCGTATCATAGATGATGAATCCACAGAAAAGAAGGGCGCCCAGAGAAGACAAGACCAG 60402
Query 9407 CTCCACTGTTTCACT 9421
||||| ||||||||
Sbjct 60403 CTCCATGGTTTCACT 60417
Score = 84.2 bits (92), Expect = 3e-11
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
|||| || |||||||| ||||| || ||||| ||||||| ||||||||||| |||||||
Sbjct 78760 CCATGCGGATGTGCACGCTGGCCGAGGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 78819
Query 9907 TGGAGGAGC 9915
|||||||||
Sbjct 78820 TGGAGGAGC 78828
>seq50462
Length=1534
Score = 143 bits (158), Expect = 3e-29
Identities = 103/119 (87%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| ||||||||||||||||| ||||||||||| ||||||||| |||||
Sbjct 281 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGACTGTAGAGTATAGGCAGTCAGACCAAGA 222
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
|| |||||||||||||| || || ||||||| ||| | ||||| ||||||||||||
Sbjct 221 AAGACTGCAGTAGTCAGTATAAAGGCTTGCAGAACCAGGAACACATTATAGAAAGTAAC 163
>seq44403
Length=740699
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| || || |||||||| || |||||||| || ||||| |
Sbjct 631769 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 631710
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
|| |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 631709 GATTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 631650
Query 65301 CTATTTCTAAGACCGTA 65317
|| ||||| | ||| ||
Sbjct 631649 CTGTTTCTTACACCATA 631633
Score = 96.9 bits (106), Expect = 5e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| ||||| || |||||||| || |||||| ||| | || || || || ||||| |
Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
| | ||| || |||||||||||||| || || || || || ||||| || | | ||||
Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076
| || | |||||||| | ||| ||||| | |||| | || || ||||
Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681
Score = 93.3 bits (102), Expect = 6e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 66801 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATG 66860
|| || | ||| |||||||||||||| | || || || || || || || |||| ||
Sbjct 612569 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGATA 612510
Query 66861 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 66920
||||| || || || | ||||| | || || ||| | || || |||||||| |||| |
Sbjct 612509 GCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCTGCAGCCAGAGTATCCAGT 612450
Query 66921 TCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
|| || || || || ||| |||| | |||||||| || |||||
Sbjct 612449 TCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 612406
>seq14694
Length=1798513
Score = 105 bits (116), Expect = 9e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||||||||| ||||| | || ||||||||||| || || ||||| || || || || |
Sbjct 774096 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 774155
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| || ||||| || ||||| ||||| || ||||| || || |||||||
Sbjct 774156 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGG 774215
Query 36300 C 36300
|
Sbjct 774216 C 774216
Score = 95.1 bits (104), Expect = 2e-14
Identities = 109/145 (75%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 35806 GTTTCTTTAAAAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA----GACATAACTC 35861
|||| ||| |||||| |||| | | |||| ||| ||| |||| ||||| || |
Sbjct 772095 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 772153
Query 35862 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 35921
|||| | |||||||| ||||| || || || || || || || || ||||||| ||| |
Sbjct 772154 CCATCCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 772213
Query 35922 TATTTTCCATGAAATCGAATGGATT 35946
||||||||||||| || ||||||||
Sbjct 772214 TATTTTCCATGAAGTCAAATGGATT 772238
>seq116961
Length=993603
Score = 91.5 bits (100), Expect = 2e-13
Identities = 197/292 (67%), Gaps = 7/292 (2%)
Strand=Plus/Minus
Query 33964 TCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACATTG 34023
||||||||| | || |||| | | || ||||| || || | ||| || | || || |
Sbjct 255538 TCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTTTCACTTCA 255479
Query 34024 AATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCGTCT 34083
|| | ||||||| ||||| || | || || | |||||| ||||||||||| |||
Sbjct 255478 AACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAATCTTCATCT 255419
Query 34084 ATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTAGGAGCTATT 34140
|| ||||| |||||| ||| || ||||| | || ||||| | ||||||| |
Sbjct 255418 ATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTGGAGCTACT 255359
Query 34141 CTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGTCTTTCT 34200
|| |||||||| ||| | | || ||| ||||| || | | || ||||||
Sbjct 255358 CTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA--CAATGGCTTTCT 255301
Query 34201 CC--TGGAGGGATAGTATAATAATAAGCGCTATATAAATCATATCCGGCGGC 34250
|| || ||||| ||||||| ||| || || || | || || || || ||
Sbjct 255300 CCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 255249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 657190699229320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |