Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq14694 89.7 4e-13 seq44856 84.2 2e-11 >seq14694 Length=1798513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799 |||| | |||||||||| || || ||||| || | || ||||| || ||||| | || Sbjct 774226 ACGTGTGGTGGCCTTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAAT 774167 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 ||||||||| |||||||| || ||||| || | |||||||||| ||| | ||||| Sbjct 774166 ATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAATGAGCTTATTAG 774107 Query 22860 CCGTGACGA 22868 | | ||||| Sbjct 774106 CAGAGACGA 774098 >seq44856 Length=74269 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 ||||||| || ||||| |||||||| | || |||||||| ||||| || |||||||||| Sbjct 50630 TGGCCTTCGCTGCTGTGGAAGGCGTTTTCTTCTCTGGGTCGTTTGCTGCTATATTCTGGC 50689 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 ||||||| | |||||||| || | | ||||| || ||| | || ||| | || | Sbjct 50690 TGAAGAAGAGAGGCCTCATGCCTGGACTCACCTTTTCAAATGAGCTCATCAGCAGGGATG 50749 Query 22868 A 22868 | Sbjct 50750 A 50750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355715330541319