Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq14694 89.7 4e-13
seq44856 84.2 2e-11
>seq14694
Length=1798513
Score = 89.7 bits (98), Expect = 4e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 22740 ACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCAT 22799
|||| | |||||||||| || || ||||| || | || ||||| || ||||| | ||
Sbjct 774226 ACGTGTGGTGGCCTTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAAT 774167
Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859
||||||||| |||||||| || ||||| || | |||||||||| ||| | |||||
Sbjct 774166 ATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAATGAGCTTATTAG 774107
Query 22860 CCGTGACGA 22868
| | |||||
Sbjct 774106 CAGAGACGA 774098
>seq44856
Length=74269
Score = 84.2 bits (92), Expect = 2e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807
||||||| || ||||| |||||||| | || |||||||| ||||| || ||||||||||
Sbjct 50630 TGGCCTTCGCTGCTGTGGAAGGCGTTTTCTTCTCTGGGTCGTTTGCTGCTATATTCTGGC 50689
Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867
||||||| | |||||||| || | | ||||| || ||| | || ||| | || |
Sbjct 50690 TGAAGAAGAGAGGCCTCATGCCTGGACTCACCTTTTCAAATGAGCTCATCAGCAGGGATG 50749
Query 22868 A 22868
|
Sbjct 50750 A 50750
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355715330541319
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |