Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq97228 87.8 2e-12 seq66478 87.8 2e-12 >seq97228 Length=228612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| ||||||||||| || || || || | ||||| ||||| Sbjct 211768 TGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGC 211709 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 |||||||| ||||||| | ||||||||| ||||| || |||||||| || ||| || Sbjct 211708 TTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTTG 211649 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | ||| | ||||| | ||| || ||||| | || | || || || | Sbjct 211648 GCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCATA 211589 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | || || ||||| || ||||| Sbjct 211588 AGGGTCTTCACGAAAATCTGCAT 211566 >seq66478 Length=146994 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | ||| || || | ||| | || |||||||| || ||||| || || Sbjct 11241 GCCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 11182 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | |||| |||| ||||| || |||||| |||| || || ||||| || || || Sbjct 11181 AAGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGG 11122 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||| | ||||| || ||| || || | | || | ||||| |||||||||| Sbjct 11121 GATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCAC 11062 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | ||||||||||||| || || | ||| |||| ||| Sbjct 11061 CTCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCAT 11014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495323791901600