Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq44403 120 4e-22
seq14694 105 9e-18
seq116961 96.9 5e-15
>seq44403
Length=740699
Score = 120 bits (132), Expect = 4e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| || || |||||||| || |||||||| || ||||| |
Sbjct 631769 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 631710
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
|| |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | || |
Sbjct 631709 GATTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 631650
Query 71263 CTATTTCTAAGACCAT 71278
|| ||||| | |||||
Sbjct 631649 CTGTTTCTTACACCAT 631634
Score = 105 bits (116), Expect = 9e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927
|||| ||||| || |||||||| || |||||| |||| |||| || || ||||| || |
Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792
Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987
| | ||||| |||||||||||||| || || || || || ||||| || | | ||||
Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732
Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038
| || | |||||||| | ||| ||||| | |||| | || || ||||
Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681
Score = 98.7 bits (108), Expect = 1e-15
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456
|| |||| ||| | || | || || ||||| || | |||||||| ||||| ||||||
Sbjct 617626 CTGGACAGTTGTGGGCGGTTGGTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTAAAC 617567
Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516
|| || ||||| || || ||||| || ||||| || | || |||||| || || ||
Sbjct 617566 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATCGCAGCATCAATATCCTCTTTGTGAATC 617507
Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555
|| || | || | ||| ||||||||||| |||||||||
Sbjct 617506 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 617468
Score = 89.7 bits (98), Expect = 7e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081
||||| ||||| |||||||| ||||||||||| || | || ||||| | || || |||
Sbjct 624562 ACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGC 624503
Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141
|| || || ||||| ||||| || | || |||||| | | || || | ||||| ||
Sbjct 624502 TCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCAAGGC 624443
Query 72142 TCCAAGTATATGGC 72155
|||| ||| |||||
Sbjct 624442 TCCAGGTAAATGGC 624429
Score = 87.8 bits (96), Expect = 2e-12
Identities = 116/161 (72%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 71410 GCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTG 71469
||||| ||||| || || || || |||||||||||||| ||||| || || | ||||||
Sbjct 627679 GCTAGGTCACAGCTAGCTTCCAAAGCTCCATAATAAATAGTTTCAAAGATTTGCTTATTC 627620
Query 71470 AGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 71529
| || ||||| ||||| ||||| || || | | || || || || |||||||
Sbjct 627619 AATAACTGGGCTTCTGGGCTCTCAAAGGGGTATCTCATCAGGATGAAAGCATCTGCTAGA 627560
Query 71530 CCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGA 71570
||||| || ||||| || || || | || | ||||| ||
Sbjct 627559 CCTTGTACCCCAATTCCAATGGGCCGATGGCGTTTATTTGA 627519
>seq14694
Length=1798513
Score = 105 bits (116), Expect = 9e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||| ||||| ||||| | || ||||||||||| || || ||||| || || || || |
Sbjct 774096 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 774155
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || ||||| |||||||| ||||| || || |||||||
Sbjct 774156 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGG 774215
Query 42207 C 42207
|
Sbjct 774216 C 774216
Score = 100 bits (110), Expect = 4e-16
Identities = 110/145 (76%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 41713 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA----GACATAACTC 41768
|||| ||| || ||| |||| || | |||| ||| ||| |||| ||||| || |
Sbjct 772095 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 772153
Query 41769 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATA 41828
|||| | |||||||| ||||| || || || || || || ||||||||||| | ||| |
Sbjct 772154 CCATCCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 772213
Query 41829 TATTTTCCATGAAATCAAACGGATT 41853
||||||||||||| ||||| |||||
Sbjct 772214 TATTTTCCATGAAGTCAAATGGATT 772238
>seq116961
Length=993603
Score = 96.9 bits (106), Expect = 5e-15
Identities = 205/301 (68%), Gaps = 9/301 (3%)
Strand=Plus/Minus
Query 39854 CTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTAT 39913
|||| | ||||||||| | || |||| | | || ||||| || || | ||| || | |
Sbjct 255546 CTTCTAAGTCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTT 255487
Query 39914 TTACATTGAAAGTACA-TTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAA 39972
| || || ||| | | ||||||| ||||| || | || || | ||||| ||||||
Sbjct 255486 TCAC-TTCAAACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAA 255428
Query 39973 TCTTCGTCTATTACACCGCCTCCTATATCAAT---ACCTTTTAGGGACAGACCAGACCTA 40029
||||| ||||| ||||| |||||| ||| || ||||| | || ||||| |
Sbjct 255427 TCTTCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCT 255368
Query 40030 GGAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAAC 40089
||||||| ||| |||||||| ||| | | || ||| ||||| || | |
Sbjct 255367 GGAGCTACTCTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA--CAA 255310
Query 40090 TGTCTTTCTCC--CGGAGGGATAGTATAATCGTAAGCGCTATACAAATCATATCCAGCGG 40147
|| |||||||| || ||||| |||||||| || || || |||| || || || || |
Sbjct 255309 TGGCTTTCTCCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAG 255250
Query 40148 C 40148
|
Sbjct 255249 C 255249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670137751253480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |