Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq44856 93.3 4e-14 >seq44856 Length=74269 Score = 93.3 bits (102), Expect = 4e-14 Identities = 78/96 (81%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 12970 TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCAT 13029 ||||| | ||| |||||||| |||||||| |||||||||||||| ||| |||||||||| Sbjct 57114 TTCTACAAGCAACCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAACACAGTTCAT 57055 Query 13030 TCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065 || || | ||||||| |||||||||||||| Sbjct 57054 CCCAATAAGGCCAACAGGCAAGGCTTCTGTTAAAAA 57019 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||| || || || ||||| |||||||| || || || ||||| || |||| || || Sbjct 50750 TCATCCCTGCTGATGAGCTCATTTGAAAAGGTGAGTCCAGGCATGAGGCCTCTCTTCTTC 50691 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||||||||||||||| || || || || | ||||| || || || || || Sbjct 50690 AGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAACGCCTTCCACAGCAGCGAAGGCC 50631 Query 13295 ATCAACCTTTCACC 13308 | || ||||| || Sbjct 50630 ACCACTCTTTCCCC 50617 Score = 89.7 bits (98), Expect = 4e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || |||||||| |||||||||||||| |||||| Sbjct 58067 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTCC 58008 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| || ||||||| Sbjct 58007 ATAAAATCAAAGGGATTTT 57989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430355381618946