Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq44856 93.3 4e-14
>seq44856
Length=74269
Score = 93.3 bits (102), Expect = 4e-14
Identities = 78/96 (81%), Gaps = 0/96 (0%)
Strand=Plus/Minus
Query 12970 TTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCAT 13029
||||| | ||| |||||||| |||||||| |||||||||||||| ||| ||||||||||
Sbjct 57114 TTCTACAAGCAACCTGTCAGCTACAAACTCAATGTACTGTTTCATCAAAACACAGTTCAT 57055
Query 13030 TCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAA 13065
|| || | ||||||| ||||||||||||||
Sbjct 57054 CCCAATAAGGCCAACAGGCAAGGCTTCTGTTAAAAA 57019
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
||||| || || || ||||| |||||||| || || || ||||| || |||| || ||
Sbjct 50750 TCATCCCTGCTGATGAGCTCATTTGAAAAGGTGAGTCCAGGCATGAGGCCTCTCTTCTTC 50691
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| ||| ||||||||||||||||| || || || || | ||||| || || || || ||
Sbjct 50690 AGCCAGAATATAGCAGCAAACGACCCAGAGAAGAAAACGCCTTCCACAGCAGCGAAGGCC 50631
Query 13295 ATCAACCTTTCACC 13308
| || ||||| ||
Sbjct 50630 ACCACTCTTTCCCC 50617
Score = 89.7 bits (98), Expect = 4e-13
Identities = 67/79 (85%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922
||||| || ||||| ||| ||||| || |||||||| |||||||||||||| ||||||
Sbjct 58067 TGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTTCC 58008
Query 12923 ATAAAATCGAAAGGATTTT 12941
|||||||| || |||||||
Sbjct 58007 ATAAAATCAAAGGGATTTT 57989
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430355381618946
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |