Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq97228 154 3e-32 seq117227 136 9e-27 seq7954 136 9e-27 seq66478 125 2e-23 seq116961 114 3e-20 seq75922 113 1e-19 seq117087 98.7 2e-15 seq9545 93.3 1e-13 seq34857 89.7 1e-12 seq97156 87.8 4e-12 seq76410 86.0 1e-11 seq56319 84.2 5e-11 >seq97228 Length=228612 Score = 154 bits (170), Expect = 3e-32 Identities = 162/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 211774 ACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCC 211715 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||||| || || ||||| || ||||||||||| ||||||||||||||||| Sbjct 211714 AGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGG 211655 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| ||||| || || || || || Sbjct 211654 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTC 211595 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| || || || || |||||||| ||| Sbjct 211594 CCCATAAGGGTCTTCACGAAAATCTGCATCTTG 211562 >seq117227 Length=121535 Score = 136 bits (150), Expect = 9e-27 Identities = 158/212 (75%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| || |||||||| | ||| | || ||||| Sbjct 79494 ACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCC 79435 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||||||| || |||||||| | ||||||||| |||||||| |||||||| Sbjct 79434 AGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTTATCCTGG 79375 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || ||||||||||||| || || ||||| |||| || || || || || Sbjct 79374 ATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTTTTC 79315 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| || | || || ||||| || || Sbjct 79314 CCTGTAAG-GTCCTCACGAAAATCTGAATCTT 79284 >seq7954 Length=808569 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104351 ACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCT 104410 || ||||| | || || || || ||||| | |||||||| | ||| | || ||||| Sbjct 793850 ACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGGCCATCTTCC 793791 Query 104411 AGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGA 104470 || || || ||||| || || ||||| || ||||||||||| |||||||| |||||||| Sbjct 793790 AGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 793731 Query 104471 ATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTA 104530 ||||| || || | |||||||| || || ||||| ||||| || || || || || Sbjct 793730 ATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGTTTTC 793671 Query 104531 CCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || |||| || || ||||| |||| ||| ||| Sbjct 793670 CCTGTAAAGGTCTTCACAAAAATCTCCATCTTG 793638 >seq66478 Length=146994 Score = 125 bits (138), Expect = 2e-23 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | | || || || | || || |||||||| || || |||||| Sbjct 11243 ATGCCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCA 11184 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || |||| || || || |||||||| || || | ||| || ||||| Sbjct 11183 GAAAGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGG 11124 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || | ||||||||||| ||||| || || ||||| || | ||| || || || || Sbjct 11123 GGGATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCC 11064 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| || || || ||||| || || || || || | || || | ||||||| Sbjct 11063 ACCTCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTTG 11010 >seq116961 Length=993603 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 65771 AAACTCCTCCTTACCGAAATTAAATATTAATATTCCAACATTACCTCTATAGTCTGAATC 65830 ||||| ||| || || |||||||| | | | |||||||| |||||||| ||| ||| Sbjct 255479 AAACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAATCTTCATC 255420 Query 65831 TATAACACCAGCACCTACATCTATAAAGTAATTATAC-GCTAATCCAGATCGGGGAGCTA 65889 ||| |||||||| ||||||||||| ||| || ||| || || ||||| | ||||||| Sbjct 255419 TATGACACCAGCTCCTACATCTATGAAG-GGTTTTACTGCCAAGCCAGAACCTGGAGCTA 255361 Query 65890 TTCTACCATAATATCCTCTAGGAACTGATATAATCAAATCAGTAAATACCAATTCTTTGT 65949 ||| ||||| |||| |||||| | ||| | || || || | |||| | Sbjct 255360 CTCTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCACAATGGCTTTCT 255301 Query 65950 CCATGGGTTGTACGGTATAATCGTACGCGCTATATAGATCATATCCTGCAGC 66001 |||||||| | | |||||||| || || || || || || || || ||||| Sbjct 255300 CCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 255249 >seq75922 Length=371470 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 5/207 (2%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || ||||| ||||| | || ||||| || || || || Sbjct 193756 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 193815 Query 104423 GCAAAAATTAGCCTCTGTTGATCAG-----GAGGTATTCCTTCTTTATCCTGAATCTTTG 104477 ||||| || ||||||||||| || | | || || || || |||||||| ||||| | Sbjct 193816 GCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTATCCTGGATCTTGG 193875 Query 104478 CTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAA 104537 | || ||||| || | || || || || || || || || || || ||||| | || | Sbjct 193876 CCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCTGGTCA 193935 Query 104538 GTGTTTTTACAAATATCTGCATTTTGT 104564 | || || | || ||||||||||||| Sbjct 193936 GGGTCTTCATGAAGATCTGCATTTTGT 193962 >seq117087 Length=234790 Score = 98.7 bits (108), Expect = 2e-15 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 104355 GATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTT 104414 |||| | ||||| || | ||| | ||||||||||| | ||| | || ||||| || | Sbjct 123113 GATGAAGGGTAGACTCCATTTGAGTGTTATAGTCAGACAAAGTGCAACA-TCTTCCAGCT 123055 Query 104415 GTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCT 104474 | | |||||||| | ||||| | ||||||||||| || | | | | ||||||||||| Sbjct 123054 GCTGGCCAGCAAAGAGCAGCCTTAGCTGATCAGGAGGAATGCGTCCCTCATCCTGAATCT 122995 Query 104475 TTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTT-ACCA 104533 | || ||||||||||||| || || ||||| |||| || | || ||||| ||| Sbjct 122994 TGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTTGAGCATTATGGTCTTCACCC 122935 Query 104534 GTAAGTGTTTTTACAAATATC 104554 | || || |||| || ||| Sbjct 122934 ATGAGGGTCTTTAAGAAAATC 122914 >seq9545 Length=18559 Score = 93.3 bits (102), Expect = 1e-13 Identities = 92/118 (78%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 104375 TGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGC 104434 ||||| || |||||||| | ||| | || ||||| || || || |||||| | | | | Sbjct 10975 TGAATGTTGTAGTCAGACAAAGTACAGCCATCTTCAAGCTGCTTACCAGCAGGA-TCAAC 11033 Query 104435 CTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTA 104492 ||||| | ||||||||| | || || |||||||||||||| || ||||||||||||| Sbjct 11034 CTCTGCTCATCAGGAGGAGTCCCGTCCTTATCCTGAATCTTGGCCTTTACATTTTCTA 11091 >seq34857 Length=917977 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||| |||| |||||||| ||||| || ||||||||||||| | || | ||||| || Sbjct 207088 ATTTCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTA-TATGTCCCAGGGTTCAGCC 207146 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| |||||||| || ||||| |||| || || |||||||| ||| Sbjct 207147 TCAAGTGTGATAGTCTTCCCTGTAAGGGTTTCCACGAAAATCTGCATCTTG 207197 >seq97156 Length=413001 Score = 87.8 bits (96), Expect = 4e-12 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 104366 GATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCA 104425 || ||||| |||| || |||||||| | | | | |||||||| || || || || || Sbjct 395460 GACTCTTTTTGAACGTTGTAGTCAGACAAATATGT-CCGTCTTCCAGCTGCTTACCCACA 395402 Query 104426 AAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACA 104485 | | || |||||||||| || |||| |||||||| | |||||| ||||| || ||||| Sbjct 395401 AGA-TTGGCCTCTGTTGGCCAAGAGGAATTCCTTCCTCATCCTGGATCTTGCCTCTTACA 395343 Query 104486 TTTTCTACGGTATCGCTAGGTTCTACCT-CTAGTGTAAT 104523 |||| | | ||| ||| |||| || |||||||||| Sbjct 395342 TTTTATGTGATATATG-AGGGTCTAACTTCTAGTGTAAT 395305 >seq76410 Length=63831 Score = 86.0 bits (94), Expect = 1e-11 Identities = 97/129 (75%), Gaps = 1/129 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| || || ||||| || ||||||| | ||| | | ||||| || || || ||| Sbjct 42165 GTAGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACAGTCATCTTCCAGCTGCTTACCA 42224 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||| | | | |||||| | |||| |||| | || || |||||||||||||| || ||| Sbjct 42225 GCAGGA-TCAACCTCTGCTCATCAAGAGGAGTCCCCTCCTTATCCTGAATCTTGGCCTTT 42283 Query 104483 ACATTTTCT 104491 ||||||||| Sbjct 42284 ACATTTTCT 42292 >seq56319 Length=26720 Score = 84.2 bits (92), Expect = 5e-11 Identities = 144/208 (69%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 104356 ATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTG 104415 ||| || || || | | |||||| || |||||||| | | | | | | ||| || || Sbjct 26512 ATGAAAGGTGGACTTTCACTGAATGTTGTAGTCAGACAAAATACGGCATTTTTC-AGCTG 26454 Query 104416 TTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT 104475 || ||||||| |||| || ||||||| ||| ||||| | | | |||| ||||| Sbjct 26453 CTTATCAGCAAA-----GCCTTTGCTGATCAGAAGGAATTCCAGCCTCAACCTGGATCTT 26399 Query 104476 TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||||||||||||| | ||| ||||| ||||| || || || ||||| || | Sbjct 26398 GTTTTTTACATTTTCTATAGCATCTGAAGGTTTAACCTCAAGAGTGATGGTCTTCCCCAT 26339 Query 104536 AAGTGTTTTTACAAATATCTGCATTTTG 104563 || || |||| || |||| ||| ||| Sbjct 26338 AAAGGTCTTTATGAAAATCTCCATGTTG 26311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1149637374647084