Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq116961 109 5e-19
>seq116961
Length=993603
Score = 109 bits (120), Expect = 5e-19
Identities = 164/228 (72%), Gaps = 5/228 (2%)
Strand=Plus/Minus
Query 5272 GGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATTAG 5331
||||||||||| ||||| ||| || | |||| | | || ||||| | || ||
Sbjct 255566 GGTGTCGTCCAGTGTTTTAACTTCT--AAGT-CTGGATAAAAGATCCGTTCAGAAATGAG 255510
Query 5332 CTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGT-CGCTGTTTCCGAAGTTAAACAGCA 5390
||| || |||| || || || || || ||||| | | || ||||| || ||||||||||
Sbjct 255509 CTGTGCAATCCGATCACCTTTTTTCACTTCAAACTTCTCT-TTTCCAAAATTAAACAGCA 255451
Query 5391 CCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGT 5450
| || || ||||| |||| || ||||| || || || ||||| || || || || |||
Sbjct 255450 CAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGG 255391
Query 5451 GTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAG 5498
|||| || || | ||| |||| ||| |||| | ||| ||||| ||||
Sbjct 255390 GTTTTACTGCCAAGCCAGAACCTGGAGCTACTCTTCCATAGCATCCAG 255343
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447082283643760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |