Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq116961 109 5e-19 >seq116961 Length=993603 Score = 109 bits (120), Expect = 5e-19 Identities = 164/228 (72%), Gaps = 5/228 (2%) Strand=Plus/Minus Query 5272 GGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATTAG 5331 ||||||||||| ||||| ||| || | |||| | | || ||||| | || || Sbjct 255566 GGTGTCGTCCAGTGTTTTAACTTCT--AAGT-CTGGATAAAAGATCCGTTCAGAAATGAG 255510 Query 5332 CTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGT-CGCTGTTTCCGAAGTTAAACAGCA 5390 ||| || |||| || || || || || ||||| | | || ||||| || |||||||||| Sbjct 255509 CTGTGCAATCCGATCACCTTTTTTCACTTCAAACTTCTCT-TTTCCAAAATTAAACAGCA 255451 Query 5391 CCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGT 5450 | || || ||||| |||| || ||||| || || || ||||| || || || || ||| Sbjct 255450 CAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGG 255391 Query 5451 GTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAG 5498 |||| || || | ||| |||| ||| |||| | ||| ||||| |||| Sbjct 255390 GTTTTACTGCCAAGCCAGAACCTGGAGCTACTCTTCCATAGCATCCAG 255343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447082283643760