Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 86.0 5e-12
seq7954 84.2 2e-11
>seq97228
Length=228612
Score = 86.0 bits (94), Expect = 5e-12
Identities = 158/232 (68%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| || || | || ||||| | |||||| ||| |||||||||||||||||| ||||
Sbjct 211793 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 211734
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
||| || | || |||||||||||||| || | || | | |||||||| ||
Sbjct 211733 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 211674
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||| || ||| || || ||| | | |||| || || | | ||
Sbjct 211673 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 211614
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||||| || |||||||| || | || || ||||| |||||||||||| ||
Sbjct 211613 CTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTTG 211562
>seq7954
Length=808569
Score = 84.2 bits (92), Expect = 2e-11
Identities = 150/219 (68%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48512 CTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG 48571
|| ||||| | |||||| ||| ||||||||||||| |||| |||| ||| || |
Sbjct 793856 CTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGGCCA 793797
Query 48572 TCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTG 48631
|| |||||||||||||| || | || | | |||||||| || | | ||||||
Sbjct 793796 TCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTA 793737
Query 48632 TCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATG 48691
||| || || ||| | | |||| || || | | || ||||| || |||
Sbjct 793736 TCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATG 793677
Query 48692 GTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTG 48730
||||| || || | || ||||||||||||| |||| ||
Sbjct 793676 GTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCATCTTG 793638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420638339137373
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |