Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq87169 118 1e-21
>seq87169
Length=633259
Score = 118 bits (130), Expect = 1e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 10137 TCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAG 10196
|| |||| ||| |||| || || ||| | || |||||||||||||||||||||| ||||
Sbjct 194968 TCTAGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAG 195027
Query 10197 TAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCG 10256
| ||||| ||||| ||||| || | ||| | ||| ||||| ||||||| ||||| |
Sbjct 195028 TGATGCCCCAGGCAGAAAACCATGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAG 195087
Query 10257 AGAATCTAAAGACCCTAAGG 10276
|||| || |||||||| |||
Sbjct 195088 AGAAGCTGAAGACCCTCAGG 195107
Score = 91.5 bits (100), Expect = 2e-13
Identities = 71/85 (84%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| || || ||||| |||||||| ||||||| |||||||||||| || || |||| |
Sbjct 197167 AGCTCCAAGAGAAAGGCGTCTACAAGGCCATGAATGAATTTGACATCTTCATCAACTGCA 197226
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
||||||| ||||||||||| | |||
Sbjct 197227 TAGAAGCGTACATGACCATCAGAAT 197251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546562421284480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |