Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq87169 118 1e-21 >seq87169 Length=633259 Score = 118 bits (130), Expect = 1e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 10137 TCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAG 10196 || |||| ||| |||| || || ||| | || |||||||||||||||||||||| |||| Sbjct 194968 TCTAGGGTTACTTGGGTTGCCAAGCCTTATCAGAAATGATCCAGTTTTACCTGGTAGAAG 195027 Query 10197 TAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCG 10256 | ||||| ||||| ||||| || | ||| | ||| ||||| ||||||| ||||| | Sbjct 195028 TGATGCCCCAGGCAGAAAACCATGGCCCAGAAATCAAGGAGCATTTGAACTCCCTGGGAG 195087 Query 10257 AGAATCTAAAGACCCTAAGG 10276 |||| || |||||||| ||| Sbjct 195088 AGAAGCTGAAGACCCTCAGG 195107 Score = 91.5 bits (100), Expect = 2e-13 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| ||||||| |||||||||||| || || |||| | Sbjct 197167 AGCTCCAAGAGAAAGGCGTCTACAAGGCCATGAATGAATTTGACATCTTCATCAACTGCA 197226 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| ||||||||||| | ||| Sbjct 197227 TAGAAGCGTACATGACCATCAGAAT 197251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546562421284480