Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq55139 149 9e-31 seq76021 114 2e-20 >seq55139 Length=370476 Score = 149 bits (164), Expect = 9e-31 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 9657 CCATTCTGGATGTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGAT 9716 ||| || ||||| || |||| ||||||||||| |||||||||||||||| |||||||| Sbjct 200606 CCACTCAGGATGCTCCTGTTTAAGAACATCGCANACTCTGTTGTGTTCCCGCAGCCAGAT 200547 Query 9717 AGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACG 9776 ||||| |||||||| |||||||||||||| ||||| |||| || || ||||| | || Sbjct 200546 TGTAGCATACATCATCAGACCAGGCACCAGACCAAAGACCTCCTGCCCCACAGCAAACCG 200487 Query 9777 CATATTTTCGGGCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGG 9836 | | || || | || || |||||||| | |||||| |||||||| | ||| Sbjct 200486 TAGGTGCTCAGGGGTNTGAGGGGGGTAGATCATTTCCACCTGAGTGTCTTTGACTGTGGG 200427 Query 9837 GGGATACATTTCACCGTCAAT 9857 |||||||| | || ||||| Sbjct 200426 GGGATACACCTNTCCATCAAT 200406 Score = 105 bits (116), Expect = 9e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| ||||| | || ||||| | ||| ||| | || Sbjct 199259 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGTTTCTGATCTGTCTTGAA 199200 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || |||||||| | || ||||| || ||||| Sbjct 199199 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGAGGATC 199140 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAACGTGTGCCGCATCCGGCAGAtt 10207 || |||| || ||| |||||| ||||||| ||| | | | |||||| || | Sbjct 199139 AGGGATGAATTTCTTCCTTAGAAGAACCTTTTCCAGAACTTCTTTTGAATCCGGAAGCTC 199080 Query 10208 ttttttACCTG 10218 || || |||| Sbjct 199079 CTTATTCCCTG 199069 Score = 91.5 bits (100), Expect = 2e-13 Identities = 204/298 (68%), Gaps = 10/298 (3%) Strand=Plus/Minus Query 9322 CTTACTCGGCCAGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGGGTC 9381 ||||| |||||||| || ||| | |||||||| || || | |||||| | ||||| Sbjct 201108 CTTACCCGGCCAGCGATCTGTCTGGTGAACGACTCAACAAACTGGGTGAGTCCGTGCTCA 201049 Query 9382 ATGAGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTT-TGTTTTATCAATCTC 9440 ||||| ||||| |||||||| | ||| | || || |||| || | | || |||| Sbjct 201048 ATGAGGATGGAGTTGTTGTAGAGGAACTGTTTGAAGCTGTACTCCTGGTCT-TCGATCTG 200990 Query 9441 AAACGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACG 9500 ||||| || |||| || | ||||||||||| | |||| || || | || || Sbjct 200989 AAACGTGTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCAGCTGCAATGCG 200930 Query 9501 ATTTTGGTACTGGAAC-GAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGT 9559 || |||||||||||| | | ||| ||||| || || | ||| | | |||| Sbjct 200929 GTTCTGGTACTGGAACTGCTGGTTGAAA-AGCAGCTCTGGGTCGAACTTGAGTTTGAAGT 200871 Query 9560 GGTAGCCGCTGAGCTGCTGAACATA--CTGCG-TCACGATAATGTTGATTGTTTCCCC 9614 |||| ||||| || ||||| || || || || |||| ||| ||||| || || || Sbjct 200870 GGTAACCGCTCAGGTGCTGCACGTAGTCTTCGATCAC---AATCTTGATAGTCTCTCC 200816 >seq76021 Length=182335 Score = 114 bits (126), Expect = 2e-20 Identities = 159/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || || || |||||||| ||||| || | || || || ||| || Sbjct 116479 AAGCCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATTT 116420 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| ||| || ||||||||||| |||||||| | ||| | || ||||| || |||||| Sbjct 116419 CCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCGATCTCTATCATACTCTCCCCAAAGATG 116360 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| | |||||||| | | || | ||| ||||| | ||| || ||||| Sbjct 116359 GAGTTGGGCTGACACTTTTCCAGAAGCAGCCCTGGGTAGAACTCTAAAGCATCAATGTCA 116300 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 ||||| | || | || ||||| || ||||| ||||||| Sbjct 116299 CCGTATAACTCCTCCAACTCAGCAGCCATCTCCTTCTCTCCTG 116257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707467565863120