Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq97228 111 1e-19 seq7954 96.9 3e-15 seq116961 89.7 5e-13 seq66268 89.7 5e-13 seq117227 86.0 6e-12 >seq97228 Length=228612 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | || || |||||||| | ||| || || || ||| | Sbjct 211781 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCC 211722 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || | ||||| | ||||||||||| |||||||| |||||||| Sbjct 211721 ATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTT 211662 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | |||||| Sbjct 211661 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 211602 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || |||| || ||||| || |||||||| Sbjct 211601 GGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566 >seq7954 Length=808569 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | || || |||||||| | | | || || || ||| | Sbjct 793857 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGGCC 793798 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || | ||||| | ||||||||||| |||||||| ||||| || Sbjct 793797 ATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTT 793738 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| | | | |||||| | | | || || || | |||||| Sbjct 793737 ATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGAT 793678 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||| || |||| || |||||||| |||| ||| Sbjct 793677 GGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642 >seq116961 Length=993603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 199/296 (67%), Gaps = 2/296 (1%) Strand=Plus/Minus Query 43615 CTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTCCCTGCA 43674 |||| | || || ||| | ||| |||| |||||||||| || || | || || | Sbjct 255546 CTTCTAAGTCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTT 255487 Query 43675 GCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCCTATAGT 43734 ||| | ||| | | || | || || ||||| || || || ||||| ||||| | Sbjct 255486 TCACTTCAAACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAAT 255427 Query 43735 CTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTGATCTGG 43794 |||| ||||| || || || ||||| ||||| | | |||||||||||| || | | Sbjct 255426 CTTCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTG 255367 Query 43795 CGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTACGA-GG 43853 || || || ||||| ||| ||| || |||| | | ||||| ||||| || | || Sbjct 255366 GAGCTACTCTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCACAATGG 255307 Query 43854 CTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACCCGGC 43909 || | || ||||| || | |||| | ||| |||||||| ||||| || || Sbjct 255306 CTTTCTCC-ATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGC 255252 >seq66268 Length=907216 Score = 89.7 bits (98), Expect = 5e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| ||||| | || | || || ||||| || || || |||| | |||||| Sbjct 480606 CACCAGATGCAAGATGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTC 480547 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 |||||| || || |||| || | || ||||| || || | || ||||| ||||| | Sbjct 480546 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTG 480487 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || |||||||| | | |||||| | | ||||| |||| |||||||| || Sbjct 480486 GATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 480427 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTG 95004 || || || || ||||| |||||||| Sbjct 480426 GCCCGTCAGGGTCTTCACGAAGATCTG 480400 >seq117227 Length=121535 Score = 86.0 bits (94), Expect = 6e-12 Identities = 153/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | || || |||||||| | ||| || || || ||| | Sbjct 79501 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCC 79442 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || | ||||||| | || |||| ||| |||||||| ||||| || Sbjct 79441 ATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTT 79382 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || | | |||||| Sbjct 79381 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGAT 79322 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012 |||||| || ||||| || |||| || ||||| || |||| Sbjct 79321 GGTTTTCCCTGTAAG-GTCCTCACGAAAATCTGAAT-CTTA 79283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447622276682280