Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 111 1e-19
seq7954 96.9 3e-15
seq116961 89.7 5e-13
seq66268 89.7 5e-13
seq117227 86.0 6e-12
>seq97228
Length=228612
Score = 111 bits (122), Expect = 1e-19
Identities = 154/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| |||||| | || | || || |||||||| | ||| || || || ||| |
Sbjct 211781 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCC 211722
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || | ||||| | ||||||||||| |||||||| ||||||||
Sbjct 211721 ATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTT 211662
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | |||||| | | | || || || | ||||||
Sbjct 211661 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 211602
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| || |||| || ||||| || ||||||||
Sbjct 211601 GGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq7954
Length=808569
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| |||||| | || | || || |||||||| | | | || || || ||| |
Sbjct 793857 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGGCC 793798
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || || | ||||| | ||||||||||| |||||||| ||||| ||
Sbjct 793797 ATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTT 793738
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| | | | |||||| | | | || || || | ||||||
Sbjct 793737 ATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGAT 793678
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|||||| || |||| || |||||||| |||| |||
Sbjct 793677 GGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642
>seq116961
Length=993603
Score = 89.7 bits (98), Expect = 5e-13
Identities = 199/296 (67%), Gaps = 2/296 (1%)
Strand=Plus/Minus
Query 43615 CTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTCCCTGCA 43674
|||| | || || ||| | ||| |||| |||||||||| || || | || || |
Sbjct 255546 CTTCTAAGTCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTT 255487
Query 43675 GCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCCTATAGT 43734
||| | ||| | | || | || || ||||| || || || ||||| ||||| |
Sbjct 255486 TCACTTCAAACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAAT 255427
Query 43735 CTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTGATCTGG 43794
|||| ||||| || || || ||||| ||||| | | |||||||||||| || | |
Sbjct 255426 CTTCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTG 255367
Query 43795 CGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTACGA-GG 43853
|| || || ||||| ||| ||| || |||| | | ||||| ||||| || | ||
Sbjct 255366 GAGCTACTCTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCACAATGG 255307
Query 43854 CTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACCCGGC 43909
|| | || ||||| || | |||| | ||| |||||||| ||||| || ||
Sbjct 255306 CTTTCTCC-ATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGC 255252
>seq66268
Length=907216
Score = 89.7 bits (98), Expect = 5e-13
Identities = 144/207 (70%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
||||| ||||| | || | || || ||||| || || || |||| | ||||||
Sbjct 480606 CACCAGATGCAAGATGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTC 480547
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
|||||| || || |||| || | || ||||| || || | || ||||| ||||| |
Sbjct 480546 CAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTG 480487
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
|| || |||||||| | | |||||| | | ||||| |||| |||||||| ||
Sbjct 480486 GATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTT 480427
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTG 95004
|| || || || ||||| ||||||||
Sbjct 480426 GCCCGTCAGGGTCTTCACGAAGATCTG 480400
>seq117227
Length=121535
Score = 86.0 bits (94), Expect = 6e-12
Identities = 153/221 (69%), Gaps = 2/221 (1%)
Strand=Plus/Minus
Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851
|| |||||| | || | || || |||||||| | ||| || || || ||| |
Sbjct 79501 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCC 79442
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| |||||||| || | ||||||| | || |||| ||| |||||||| ||||| ||
Sbjct 79441 ATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTT 79382
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | |||||| | | | || || | | ||||||
Sbjct 79381 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGAT 79322
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTA 95012
|||||| || ||||| || |||| || ||||| || ||||
Sbjct 79321 GGTTTTCCCTGTAAG-GTCCTCACGAAAATCTGAAT-CTTA 79283
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447622276682280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |