Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq44856 95.1 1e-14
seq14694 84.2 2e-11
>seq44856
Length=74269
Score = 95.1 bits (104), Expect = 1e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185
|||||||||| ||||| || | ||| ||||||||| ||| || ||| | | | |
Sbjct 58129 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATGACTGCAAAAC 58070
Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245
||||| ||| ||||| ||| || || |||||||| || ||||| || || || ||
Sbjct 58069 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTT 58010
Query 21246 CCATAAAATCAAATGGATTTTC 21267
||||||||||||| ||||||||
Sbjct 58009 CCATAAAATCAAAGGGATTTTC 57988
>seq14694
Length=1798513
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181
|||| ||| ||||||||||| || | ||| ||| ||| | | ||||| | |||
Sbjct 772096 TTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTGTTGAACTCGACATCACCCCC 772155
Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241
|| | || || || | |||| || || || || |||||||||||||| | ||| |||
Sbjct 772156 ATCCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATA 772215
Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267
|||||| || ||||||||||||||
Sbjct 772216 TTTTCCATGAAGTCAAATGGATTTTC 772241
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531107117572520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |