Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq44856 95.1 1e-14 seq14694 84.2 2e-11 >seq44856 Length=74269 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||| | | | | Sbjct 58129 TTTAAAAATCTGCATCCAAGGTGAAGACATTATCTGTGGTTTCTGCCATGACTGCAAAAC 58070 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 ||||| ||| ||||| ||| || || |||||||| || ||||| || || || || Sbjct 58069 GCTGATACTCAGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCTTCTAACGAAATGTTTT 58010 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 58009 CCATAAAATCAAAGGGATTTTC 57988 >seq14694 Length=1798513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 |||| ||| ||||||||||| || | ||| ||| ||| | | ||||| | ||| Sbjct 772096 TTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTGTTGAACTCGACATCACCCCC 772155 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | || || || | |||| || || || || |||||||||||||| | ||| ||| Sbjct 772156 ATCCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATA 772215 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||| || |||||||||||||| Sbjct 772216 TTTTCCATGAAGTCAAATGGATTTTC 772241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531107117572520