Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq44403 122 1e-22
seq14694 111 2e-19
seq116961 96.9 4e-15
>seq44403
Length=740699
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| || || |||||||| || |||||||| || ||||| |
Sbjct 631769 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 631710
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
|| |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 631709 GATTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 631650
Query 62457 CTATTTCTAAGACCGTA 62473
|| ||||| | ||| ||
Sbjct 631649 CTGTTTCTTACACCATA 631633
Score = 96.9 bits (106), Expect = 4e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| ||||| || |||||||| || |||||| ||| | || || || || ||||| |
Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
| | ||| || |||||||||||||| || || || || || ||||| || | | ||||
Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232
| || | |||||||| | ||| ||||| | |||| | || || ||||
Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||| ||||| |||||||| ||||||||||| || | || ||||| | || ||
Sbjct 624566 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 624507
Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331
|| || || || ||||| ||||| || | || |||||| | | || || | |||||
Sbjct 624506 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 624447
Query 63332 CGGTTCCAAGTATATGGC 63349
|| |||| ||| |||||
Sbjct 624446 AGGCTCCAGGTAAATGGC 624429
>seq14694
Length=1798513
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| ||||| || || ||||||||||| || || ||||| || || || || |
Sbjct 774096 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 774155
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || ||||| |||||||| ||||| || || |||||||
Sbjct 774156 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGG 774215
Query 33446 C 33446
|
Sbjct 774216 C 774216
Score = 95.1 bits (104), Expect = 2e-14
Identities = 109/145 (75%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 32952 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTC 33007
|||| ||| || ||| |||| || | |||| ||| ||| |||| ||||| || |
Sbjct 772095 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 772153
Query 33008 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33067
|||| | |||||||| ||||| || || || || || || || |||||||| | ||| |
Sbjct 772154 CCATCCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 772213
Query 33068 TATTTTCCATGAAATCAAACGGATT 33092
||||||||||||| ||||| |||||
Sbjct 772214 TATTTTCCATGAAGTCAAATGGATT 772238
>seq116961
Length=993603
Score = 96.9 bits (106), Expect = 4e-15
Identities = 203/300 (68%), Gaps = 7/300 (2%)
Strand=Plus/Minus
Query 31103 CTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTAT 31162
|||| | ||||||||| | || |||| | | || ||||| || || | ||| || | |
Sbjct 255546 CTTCTAAGTCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTT 255487
Query 31163 TTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAAT 31222
| || | |||| | ||||||| ||||| || | || || | ||||| |||||||
Sbjct 255486 TCACTTCAAACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAAT 255427
Query 31223 CTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAG 31279
|||| ||||| ||||| |||||| ||| || | ||||| | || ||||| | |
Sbjct 255426 CTTCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTG 255367
Query 31280 GAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACT 31339
|||||| ||| |||||||| ||| | | || ||| ||||| || | | |
Sbjct 255366 GAGCTACTCTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA--CAAT 255309
Query 31340 GTCGTTCTCC--TGGAGGGATAGTATAATCGTAAGCGCTATATAAATCATATCCGGCGGC 31397
| | |||||| || ||||| |||||||| || || || || | || || || || ||
Sbjct 255308 GGCTTTCTCCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 255249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622017661548680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |