Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq44403 122 1e-22 seq14694 111 2e-19 seq116961 96.9 4e-15 >seq44403 Length=740699 Score = 122 bits (134), Expect = 1e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| || || |||||||| || |||||||| || ||||| | Sbjct 631769 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 631710 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 || |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 631709 GATTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 631650 Query 62457 CTATTTCTAAGACCGTA 62473 || ||||| | ||| || Sbjct 631649 CTGTTTCTTACACCATA 631633 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||| | Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 | | ||| || |||||||||||||| || || || || || ||||| || | | |||| Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232 | || | |||||||| | ||| ||||| | |||| | || || |||| Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 624566 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 624507 Query 63272 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63331 || || || || ||||| ||||| || | || |||||| | | || || | ||||| Sbjct 624506 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 624447 Query 63332 CGGTTCCAAGTATATGGC 63349 || |||| ||| ||||| Sbjct 624446 AGGCTCCAGGTAAATGGC 624429 >seq14694 Length=1798513 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||||||||| ||||| || || ||||||||||| || || ||||| || || || || | Sbjct 774096 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 774155 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || ||||| |||||||| ||||| || || ||||||| Sbjct 774156 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGG 774215 Query 33446 C 33446 | Sbjct 774216 C 774216 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/145 (75%), Gaps = 5/145 (3%) Strand=Plus/Plus Query 32952 GTTTCTTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA----GACATAACTC 33007 |||| ||| || ||| |||| || | |||| ||| ||| |||| ||||| || | Sbjct 772095 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 772153 Query 33008 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATA 33067 |||| | |||||||| ||||| || || || || || || || |||||||| | ||| | Sbjct 772154 CCATCCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 772213 Query 33068 TATTTTCCATGAAATCAAACGGATT 33092 ||||||||||||| ||||| ||||| Sbjct 772214 TATTTTCCATGAAGTCAAATGGATT 772238 >seq116961 Length=993603 Score = 96.9 bits (106), Expect = 4e-15 Identities = 203/300 (68%), Gaps = 7/300 (2%) Strand=Plus/Minus Query 31103 CTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCAGTAT 31162 |||| | ||||||||| | || |||| | | || ||||| || || | ||| || | | Sbjct 255546 CTTCTAAGTCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTT 255487 Query 31163 TTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAAT 31222 | || | |||| | ||||||| ||||| || | || || | ||||| ||||||| Sbjct 255486 TCACTTCAAACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAAT 255427 Query 31223 CTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAG 31279 |||| ||||| ||||| |||||| ||| || | ||||| | || ||||| | | Sbjct 255426 CTTCATCTATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTG 255367 Query 31280 GAGCTATTCTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAACT 31339 |||||| ||| |||||||| ||| | | || ||| ||||| || | | | Sbjct 255366 GAGCTACTCTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA--CAAT 255309 Query 31340 GTCGTTCTCC--TGGAGGGATAGTATAATCGTAAGCGCTATATAAATCATATCCGGCGGC 31397 | | |||||| || ||||| |||||||| || || || || | || || || || || Sbjct 255308 GGCTTTCTCCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 255249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622017661548680