Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq66478 87.8 1e-12
>seq66478
Length=146994
Score = 87.8 bits (96), Expect = 1e-12
Identities = 152/218 (70%), Gaps = 5/218 (2%)
Strand=Plus/Minus
Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779
|||||| ||| ||||| |||||||| || || ||||||||||| | | || | |
Sbjct 11456 CCTCAG-ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCC 11398
Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839
|| |||| || ||||| ||| | || || ||||| ||||| || | | |||||||
Sbjct 11397 ATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTT 11338
Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897
| || || || ||| || | | | ||||| | ||| ||| ||||| ||||
Sbjct 11337 ACCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTG 11280
Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
||||| || || ||||| || || ||||| ||||||||
Sbjct 11279 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 11242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404498654305270
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |