Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq66478 87.8 1e-12 >seq66478 Length=146994 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/218 (70%), Gaps = 5/218 (2%) Strand=Plus/Minus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 |||||| ||| ||||| |||||||| || || ||||||||||| | | || | | Sbjct 11456 CCTCAG-ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCC 11398 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 || |||| || ||||| ||| | || || ||||| ||||| || | | ||||||| Sbjct 11397 ATCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTT 11338 Query 16840 GTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 | || || || ||| || | | | ||||| | ||| ||| ||||| |||| Sbjct 11337 ACCCTGGATCTTGGC--CTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTG 11280 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||| || || ||||| |||||||| Sbjct 11279 ATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 11242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404498654305270