Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq55417 109 4e-19
seq97228 102 5e-17
seq75688 100 2e-16
seq17354 100 2e-16
seq7954 93.3 3e-14
>seq55417
Length=96570
Score = 109 bits (120), Expect = 4e-19
Identities = 78/90 (87%), Gaps = 5/90 (6%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||| | |||||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 39725 AAGCCCATCCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 39784
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986
| |||| |||||||||||||||||||||||
Sbjct 39785 TCATCCATTCATGCGCGTCACTAATTAGAT 39814
>seq97228
Length=228612
Score = 102 bits (112), Expect = 5e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||| ||| |||||||||||| ||||| ||||||||| ||| | ||
Sbjct 211778 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 211719
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | || || || || || || || | ||| ||||| | || | |||||||| ||
Sbjct 211718 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 211659
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||| ||||| | | ||| || |||||| || | || || ||
Sbjct 211658 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 211599
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| ||| | | ||| |||||||| |||||||| ||
Sbjct 211598 TTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563
>seq75688
Length=7763
Score = 100 bits (110), Expect = 2e-16
Identities = 79/95 (83%), Gaps = 5/95 (5%)
Strand=Plus/Plus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 1769 AAGCCCGTTCCCTTGGCTGTGGTTTCCCTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 1828
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| | ||||| ||||||||||||||| |||
Sbjct 1829 TCATCCACTTATGCGAGTCACTAATTAGATGGCGA 1863
>seq17354
Length=414019
Score = 100 bits (110), Expect = 2e-16
Identities = 69/78 (88%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005
||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 332353 TCTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCG 332412
Query 20006 CGGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 332413 TGCCGGTATTTAGCCTTA 332430
>seq7954
Length=808569
Score = 93.3 bits (102), Expect = 3e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164
|||||| | |||||| ||| |||||||||||| |||| ||||||||| ||| | ||
Sbjct 793854 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGGCCATC 793795
Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224
|| | || || || || || || || | ||| ||||| | || | ||||| || ||
Sbjct 793794 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 793735
Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284
| || || ||||| ||| | | ||| ||| |||||| || | || || ||
Sbjct 793734 CTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 793675
Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
||| || || ||||| ||||| || |||| ||| ||
Sbjct 793674 TTTCCCTGTAAAGGTCTTCACAAAAATCTCCATCTT 793639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334459899239963
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |