Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq55417 109 4e-19 seq97228 102 5e-17 seq75688 100 2e-16 seq17354 100 2e-16 seq7954 93.3 3e-14 >seq55417 Length=96570 Score = 109 bits (120), Expect = 4e-19 Identities = 78/90 (87%), Gaps = 5/90 (6%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| | |||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 39725 AAGCCCATCCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 39784 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGAT 25986 | |||| ||||||||||||||||||||||| Sbjct 39785 TCATCCATTCATGCGCGTCACTAATTAGAT 39814 >seq97228 Length=228612 Score = 102 bits (112), Expect = 5e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||| ||||| ||||||||| ||| | || Sbjct 211778 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 211719 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || || || || || | ||| ||||| | || | |||||||| || Sbjct 211718 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 211659 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||| || |||||| || | || || || Sbjct 211658 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 211599 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| ||| | | ||| |||||||| |||||||| || Sbjct 211598 TTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563 >seq75688 Length=7763 Score = 100 bits (110), Expect = 2e-16 Identities = 79/95 (83%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| || |||||||| ||||| || ||||| || Sbjct 1769 AAGCCCGTTCCCTTGGCTGTGGTTTCCCTGGATAGTAGGTAGGGACAGTGGGAATCTTGT 1828 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| | ||||| ||||||||||||||| ||| Sbjct 1829 TCATCCACTTATGCGAGTCACTAATTAGATGGCGA 1863 >seq17354 Length=414019 Score = 100 bits (110), Expect = 2e-16 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 19946 TCTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCG 20005 ||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 332353 TCTCTTTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCG 332412 Query 20006 CGGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 332413 TGCCGGTATTTAGCCTTA 332430 >seq7954 Length=808569 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | |||||| ||| |||||||||||| |||| ||||||||| ||| | || Sbjct 793854 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGGCCATC 793795 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | || || || || || || || | ||| ||||| | || | ||||| || || Sbjct 793794 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 793735 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||||| ||| | | ||| ||| |||||| || | || || || Sbjct 793734 CTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 793675 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||| || || ||||| ||||| || |||| ||| || Sbjct 793674 TTTCCCTGTAAAGGTCTTCACAAAAATCTCCATCTT 793639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334459899239963