Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq44403 122 1e-22
seq116961 105 8e-18
seq14694 105 8e-18
>seq44403
Length=740699
Score = 122 bits (134), Expect = 1e-22
Identities = 109/137 (80%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| ||||| || || |||||||| || |||||||| || ||||| |
Sbjct 631769 ACCTGAAATTCTCCTGACAAGACCCTGCGAGTGTAGATGTTACTGGTGTAAGGTTCAATG 631710
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
|| |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | ||||
Sbjct 631709 GATTCATTATTCCCCAGAATCTGAGCAGTTGAGGCAGTAGGCATTGGGGCAATAAGTAAA 631650
Query 62312 CTATTTCTAAGACCGTA 62328
|| ||||| | ||| ||
Sbjct 631649 CTGTTTCTTACACCATA 631633
Score = 107 bits (118), Expect = 2e-18
Identities = 119/159 (75%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505
|| |||| ||| | || | || || ||||| || | |||||||| ||||||||||||
Sbjct 617626 CTGGACAGTTGTGGGCGGTTGGTCCCAGCATTGAAGAGAGTAGGAGAGGCGTGAGTAAAC 617567
Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565
|| || |||||||| || ||||| || ||||| || | || |||||| || |||||
Sbjct 617566 CACTTCTCAGAAAGCAGGTTGTATGTTTCAATCGCAGCATCAATATCCTCTTTGTGAATC 617507
Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604
|| || | || | ||| ||||| ||||| |||||||||
Sbjct 617506 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 617468
Score = 102 bits (112), Expect = 1e-16
Identities = 125/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976
|||| ||||| || |||||||| || |||||| ||| | || || || || ||||| |
Sbjct 634851 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATGT 634792
Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036
| | ||| || |||||||||||||| || || || || || ||||| || | || ||||
Sbjct 634791 TTAAAGACTGGCTTTGATCGATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTCT 634732
Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087
| || | |||||||| | ||| ||||| | |||| | || || ||||
Sbjct 634731 TCTGAGAGATTTCCCACACAGTCTTATAGAGCTGCTTTAGGTCATCAGGAA 634681
Score = 93.3 bits (102), Expect = 5e-14
Identities = 119/164 (73%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 63812 CTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATG 63871
|| || | ||| |||||||||||||| | || || || || || || || |||| ||
Sbjct 612569 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGATA 612510
Query 63872 GCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAAT 63931
||||| || || || | ||||| | || || ||| | || || |||||||| |||| |
Sbjct 612509 GCATAGTCAGGGTGCTTCGTAGTCAAGGTTGCAGCTGTCTCTGCAGCCAGAGTATCCAGT 612450
Query 63932 TCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975
|| || || || || ||| |||| | |||||||| || |||||
Sbjct 612449 TCCACTGTGGTGACCCCACTATACAGGCCTTGGATTACTTTCAT 612406
Score = 87.8 bits (96), Expect = 2e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Minus
Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126
|| |||||| ||||| |||||||| ||||||||||| || | || ||||| | || ||
Sbjct 624566 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 624507
Query 63127 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63186
|| || || || ||||| ||||| || | || |||||| | | || || | |||||
Sbjct 624506 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAGTGCCA 624447
Query 63187 CGGTTCCAAGTATATGGC 63204
|| |||| ||| |||||
Sbjct 624446 AGGCTCCAGGTAAATGGC 624429
>seq116961
Length=993603
Score = 105 bits (116), Expect = 8e-18
Identities = 200/292 (68%), Gaps = 7/292 (2%)
Strand=Plus/Minus
Query 30468 TCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTTACATTG 30527
||||||||| | || |||| | | || ||||| || || | ||| || | || || |
Sbjct 255538 TCTGGATAAAAGATCCGTTCAGAAATGAGCTGTGCAATCCGATCACCTTTTTTCACTTCA 255479
Query 30528 AATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCTTCGTCT 30587
|| | ||||||| ||||| || | || || | |||||| ||||||||||| |||
Sbjct 255478 AACTTCTCTTTTCCAAAATTAAACAGCACAACACCAACATTTCCTCTATAATCTTCATCT 255419
Query 30588 ATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACCAGACCTAGGAGCTATT 30644
|| ||||| |||||| ||| || | ||||| | || ||||| | ||||||| |
Sbjct 255418 ATGACACCAGCTCCTACATCTATGAAGGGTTTTACTGCCAAGCCAGAACCTGGAGCTACT 255359
Query 30645 CTACCATAGCAGAACTTAGGCATGGACATACTAATATCTGTCTTAATTAATTGTCTTTCT 30704
|| |||||||| ||| | | || ||| ||||| || | | || ||||||
Sbjct 255358 CTTCCATAGCATCCAGAAGGAACAGCTATCTGAATGTCTGTTTTCA--CAATGGCTTTCT 255301
Query 30705 CC--TGGAGGGATAGTATAATCATAAGCGCTATATAAATCATATCCGGCAGC 30754
|| || ||||| ||||||||||| || || || | || || || |||||
Sbjct 255300 CCATGGGTGGGATTGTATAATCATAGGCACTGTACAGGTCGTAGCCCGCAGC 255249
>seq14694
Length=1798513
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||||||||| ||||| | || ||||||||||| || || ||||| || || || || |
Sbjct 774096 CCTCGTCTCTGCTAATAAGCTCATTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 774155
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| ||||| || ||||| || ||||| ||||| || ||||| || || |||||||
Sbjct 774156 TGAGCCAGAATATTGATGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACGGCGGCAAAGG 774215
Query 32803 C 32803
|
Sbjct 774216 C 774216
Score = 91.5 bits (100), Expect = 2e-13
Identities = 108/145 (74%), Gaps = 5/145 (3%)
Strand=Plus/Plus
Query 32309 GTTTCTTTAAAAGTCAACATCTAGAGAAAAATGATTGTCTTCTTGA----GACATAACTC 32364
|||| ||| || ||| |||| | | |||| ||| ||| |||| ||||| || |
Sbjct 772095 GTTTACTTAGAAATCAGCATCCAAGGTAAAAGAATTCTCTG-TTGAACTCGACATCACCC 772153
Query 32365 CCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATA 32424
|||| | |||||||| ||||| || || || || || || || || ||||||| ||| |
Sbjct 772154 CCATCCTCTGGTATTCTCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAA 772213
Query 32425 TATTTTCCATGAAATCGAATGGATT 32449
||||||||||||| || ||||||||
Sbjct 772214 TATTTTCCATGAAGTCAAATGGATT 772238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 632686518090800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |