Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq97228 93.3 4e-14 seq75922 87.8 2e-12 seq66268 84.2 2e-11 >seq97228 Length=228612 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | | || ||||| |||| || || || ||| || Sbjct 211563 AAGATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCC 211622 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || || || || || || || || ||||| || ||| Sbjct 211623 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 211682 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || || || || || ||| | || ||| ||| || | || || ||| Sbjct 211683 CAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 211742 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| || |||||| | ||| | || ||| || | || || ||| Sbjct 211743 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGGT 211793 >seq75922 Length=371470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 143/206 (69%), Gaps = 5/206 (2%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || || | || || | ||| | || || |||| || |||||||| || Sbjct 193960 AAAATGCAGATCTTCATGAAGACCCTGACCAGCAAGACCATCACCCTGGAAGTGGAGCCC 193901 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC----- 22330 | || || | || || |||| || || || || |||||||| || || | Sbjct 193900 AGTGACTCCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCTCTCC 193841 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 |||| ||||| | || || ||||||||||| ||| | || ||| |||||| | || | Sbjct 193840 CCGACCAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTG 193781 Query 22391 ATTACAACATTCAAAAAGAATCCACC 22416 |||||||||| || ||||| |||||| Sbjct 193780 ATTACAACATCCAGAAAGAGTCCACC 193755 >seq66268 Length=907216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281 || || || || || || | || || || || |||||||||| || || ||| || Sbjct 480400 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGAC 480459 Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341 ||| | || || |||| || || ||||||||||| || || | ||| || || || Sbjct 480460 ACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCTACCTGAGCAGCAG 480519 Query 22342 CGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATT 22401 | || |||||||| ||||| ||| | |||||| | |||| | || || |||||| | Sbjct 480520 AGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCGGCACTCTGTCGGACTACAACGTC 480579 Query 22402 CAAAAAGAATCCACCATACAT 22422 || |||| |||| | | ||| Sbjct 480580 CAGAAAGGGTCCATCTTGCAT 480600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419117355177745