Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 93.3 4e-14
seq75922 87.8 2e-12
seq66268 84.2 2e-11
>seq97228
Length=228612
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| ||||| || || || | | || ||||| |||| || || || ||| ||
Sbjct 211563 AAGATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCC 211622
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || || | || || | || || || || || || || || ||||| || |||
Sbjct 211623 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 211682
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| ||| | || || || || || || ||| | || ||| ||| || | || || |||
Sbjct 211683 CAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 211742
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446
||||||||||| || |||||| | ||| | || ||| || | || || |||
Sbjct 211743 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCGTGGTGGT 211793
>seq75922
Length=371470
Score = 87.8 bits (96), Expect = 2e-12
Identities = 143/206 (69%), Gaps = 5/206 (2%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| ||||| || || | || || | ||| | || || |||| || |||||||| ||
Sbjct 193960 AAAATGCAGATCTTCATGAAGACCCTGACCAGCAAGACCATCACCCTGGAAGTGGAGCCC 193901
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC----- 22330
| || || | || || |||| || || || || |||||||| || || |
Sbjct 193900 AGTGACTCCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCTCTCC 193841
Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390
|||| ||||| | || || ||||||||||| ||| | || ||| |||||| | || |
Sbjct 193840 CCGACCAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTG 193781
Query 22391 ATTACAACATTCAAAAAGAATCCACC 22416
|||||||||| || ||||| ||||||
Sbjct 193780 ATTACAACATCCAGAAAGAGTCCACC 193755
>seq66268
Length=907216
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 22222 CAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGAT 22281
|| || || || || || | || || || || |||||||||| || || ||| ||
Sbjct 480400 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTTGAGGTCGAGCCCAGTGAC 480459
Query 22282 ACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAA 22341
||| | || || |||| || || ||||||||||| || || | ||| || || ||
Sbjct 480460 ACCATTGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCTACCTGAGCAGCAG 480519
Query 22342 CGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATT 22401
| || |||||||| ||||| ||| | |||||| | |||| | || || |||||| |
Sbjct 480520 AGGCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCGGCACTCTGTCGGACTACAACGTC 480579
Query 22402 CAAAAAGAATCCACCATACAT 22422
|| |||| |||| | | |||
Sbjct 480580 CAGAAAGGGTCCATCTTGCAT 480600
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419117355177745
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |