Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq87749 95.1 2e-14 seq88234 93.3 9e-14 seq96544 91.5 3e-13 seq67558 91.5 3e-13 seq44491 91.5 3e-13 seq8064 91.5 3e-13 seq7980 91.5 3e-13 seq117061 89.7 1e-12 seq97100 89.7 1e-12 seq75963 89.7 1e-12 seq34943 89.7 1e-12 seq117696 86.0 1e-11 seq116976 86.0 1e-11 seq98060 86.0 1e-11 seq87147 86.0 1e-11 seq72772 86.0 1e-11 seq67050 86.0 1e-11 seq89909 84.2 4e-11 seq87178 84.2 4e-11 seq76251 84.2 4e-11 seq75904 84.2 4e-11 seq17682 84.2 4e-11 >seq87749 Length=59254 Score = 95.1 bits (104), Expect = 2e-14 Identities = 65/72 (90%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 142053 GTCTCTGTGGCGCAATGGAC-AGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||||||||||||||||||| |||||| ||||||||||||||| ||||| ||||||||| Sbjct 4974 GTCTCTGTGGCGCAATGGACGAGCGCGCTGGACTTCTAATCCAGAGGTTCCGGGTTCGAG 5033 Query 142112 CCCCGCCAGAGA 142123 |||| |||||| Sbjct 5034 TCCCGGCAGAGA 5045 >seq88234 Length=31858 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 31857 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 31798 Query 142562 GCCCCACATCGGGC 142575 ||||||| | |||| Sbjct 31797 GCCCCACGTTGGGC 31784 >seq96544 Length=4716 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||||||||||||| |||||||||||||| Sbjct 1795 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 1736 Query 142562 GCCCCACATCGGG 142574 ||||||| | ||| Sbjct 1735 GCCCCACGTTGGG 1723 >seq67558 Length=25445 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| |||||||||||||||||| ||| ||||||||| |||||||||||||| Sbjct 25063 TAGCCCGGCTAGCTCAGTCGGTAGAGCATGAGATTCTTAATCTCAGGGTCGTGGGTTCGA 25004 Query 142562 GCCCCACATCGGGCA 142576 ||||||| | ||||| Sbjct 25003 GCCCCACGTTGGGCA 24989 >seq44491 Length=276053 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 |||||||| ||||||||| |||||||| ||||||||||||| | |||||||||||| Sbjct 262015 TAGCCCGGCTAGCTCAGTTGGTAGAGCATGAGACTCTTAATCTCAGGCTCGTGGGTTCGA 261956 Query 142562 GCCCCACATCGGGCA 142576 ||||||||| ||||| Sbjct 261955 GCCCCACATTGGGCA 261941 >seq8064 Length=245797 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 149243 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 149184 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 149183 CCCCACGTTGGGC 149171 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 157817 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 157758 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 157757 CCCCACGTTGGGC 157745 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 144621 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 144562 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 144561 CCCACGTTGGGC 144550 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 147284 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 147225 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 147224 CCCACGTTGGGC 147213 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 170137 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 170196 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 170197 CCCACGTTGGGC 170208 >seq7980 Length=538061 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| | Sbjct 400837 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTG 400778 Query 142563 CCCCACATCGGGC 142575 |||||||| |||| Sbjct 400777 CCCCACATTGGGC 400765 >seq117061 Length=280271 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 19621 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 19680 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 19681 CCCACGTTGGGC 19692 >seq97100 Length=959420 Score = 89.7 bits (98), Expect = 1e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 57511 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 57452 Query 142563 CCCCACATCGGGCA 142576 ||| |||| |||| Sbjct 57451 CCCTACATTAGGCA 57438 >seq75963 Length=263579 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 235578 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 235519 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 235518 CCCACGTTGGGC 235507 >seq34943 Length=304900 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 17071 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 17012 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 17011 CCCACGTTGGGC 17000 >seq117696 Length=48894 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| Sbjct 25866 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 25925 Query 142564 CCCAC 142568 ||||| Sbjct 25926 CCCAC 25930 >seq116976 Length=728104 Score = 86.0 bits (94), Expect = 1e-11 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 ||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 697447 CCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGCC 697388 Query 142565 CCACATCGGG 142574 |||| | ||| Sbjct 697387 CCACGTTGGG 697378 >seq98060 Length=36823 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| || ||||||||||||| Sbjct 20795 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGGCGTGGGTTCGAGC 20854 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 20855 CCCACGTTGGGC 20866 >seq87147 Length=961058 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 || ||||| || |||||||||||||||||| ||||||||||||| |||| |||||| Sbjct 147678 AGCTAGCCTGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCATGGGTT 147619 Query 142559 CGAGCCCCACATCGGGC 142575 |||||||||| | |||| Sbjct 147618 CGAGCCCCACGTTGGGC 147602 >seq72772 Length=1776 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| ||||||||||||| || Sbjct 235 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGC 176 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 175 CCCACGTTGGGC 164 >seq67050 Length=45612 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| ||||||||||||| | ||||||||| |||| Sbjct 29388 GCCCGGATAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGATCGTGGGTTTGAGC 29447 Query 142564 CCCACATCGGGC 142575 ||||||| |||| Sbjct 29448 CCCACATTGGGC 29459 >seq89909 Length=2140688 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| |||| |||||||| | Sbjct 1347739 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCATGGGTTCGTG 1347798 Query 142563 CCCCACATCGGGCA 142576 |||||| | ||||| Sbjct 1347799 CCCCACGTTGGGCA 1347812 >seq87178 Length=560327 Score = 84.2 bits (92), Expect = 4e-11 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 142507 CGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCC 142566 ||| |||||||||||||||||| ||||||||||||| ||||||||||||| ||||| Sbjct 498310 CGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGTGCCCC 498251 Query 142567 ACATCGGGC 142575 |||| |||| Sbjct 498250 ACATTGGGC 498242 >seq76251 Length=85890 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | |||||||||||||||||| ||||||||||||| ||||||||||||| Sbjct 63968 AGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGCA 63909 Query 142563 CCCCACATCGGGCA 142576 |||||||| ||||| Sbjct 63908 CCCCACATTGGGCA 63895 >seq75904 Length=452605 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||| | |||||||||||||||||| ||||||||||||| |||| |||||||| | Sbjct 345328 AGCCCAGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCATGGGTTCGTG 345269 Query 142563 CCCCACATCGGGCA 142576 |||||||| ||||| Sbjct 345268 CCCCACATTGGGCA 345255 >seq17682 Length=87869 Score = 84.2 bits (92), Expect = 4e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 9898 AGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTTGAG 9839 Query 142563 CCCCACATCGGGCA 142576 ||||| | ||||| Sbjct 9838 CCCCATGTTGGGCA 9825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1026264757982693