Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq75922 154 3e-32
seq97228 143 5e-29
seq66478 143 5e-29
seq66268 136 7e-27
seq7954 127 4e-24
seq7963 114 2e-20
seq117227 104 4e-17
seq108371 95.1 2e-14
seq97151 89.7 9e-13
>seq75922
Length=371470
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 5/218 (2%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| ||| || ||||||||||| |||||||| ||||| || || || | ||||||||
Sbjct 193744 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 193803
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG-----GTGGAATGCCTTCCTTGT 68367
| |||||| ||||| || || || || |||||||||| | || ||||| ||||| |
Sbjct 193804 AGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTAT 193863
Query 68368 CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGG 68427
| || ||||| |||||||| ||| |||| ||| | || ||||||| ||||||||
Sbjct 193864 CCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGATGG 193923
Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
| || | || |||||||| | ||| ||||||||| ||
Sbjct 193924 TCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTTTG 193961
>seq97228
Length=228612
Score = 143 bits (158), Expect = 5e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| | ||| || | || || |||||||| ||||| ||||| || || ||
Sbjct 211792 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 211733
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | |||||||| | |||||| || ||||| || || ||||| || || || |||
Sbjct 211732 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGA 211673
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||| || || || ||||| ||||| || || || ||||| | | ||| ||
Sbjct 211672 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 211613
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||||| ||| | |||||||| ||||| ||||||||
Sbjct 211612 TCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq66478
Length=146994
Score = 143 bits (158), Expect = 5e-29
Identities = 154/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317
||| || ||||||||||| |||||||| || || || || || | |||||||| | |||
Sbjct 11445 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTG 11386
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || ||||||| || ||||| || || ||| | || || | || |||||
Sbjct 11385 CTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTT 11326
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||||||| ||| |||||||| | || ||||||| ||||||||| || || ||
Sbjct 11325 GGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGT 11266
Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461
|||||||| || || ||||||||
Sbjct 11265 CAGGGTCTTCACAAAGATCTGCAT 11242
Score = 136 bits (150), Expect = 7e-27
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303
|| || || |||| ||| || ||||||||||| |||||||| || || || || || |
Sbjct 11231 AGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAG 11172
Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363
||||||| | |||||| || || || ||||||| || ||||| || || ||| | ||
Sbjct 11171 CCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCT 11112
Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423
|| || || ||||| |||||||| ||| |||||||| | || || || | ||||
Sbjct 11111 TTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTG 11052
Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465
||||| || || || |||||||| | ||| || | |||| ||
Sbjct 11051 ATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTTG 11010
>seq66268
Length=907216
Score = 136 bits (150), Expect = 7e-27
Identities = 146/193 (76%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 68266 TGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGG 68325
||||| |||| |||| ||| || || || || || | ||||| || | |||||| || |
Sbjct 480592 TGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTGCTTGCCAG 480533
Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385
| ||||| || || || || || ||| | ||||||||||||||||| ||||| |||||||
Sbjct 480532 CAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA 480473
Query 68386 CGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445
| ||| |||||||| | || || || | |||||||| || ||||| |||||||
Sbjct 480472 CATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCT 480413
Query 68446 TGACGAATATCTG 68458
| ||||| |||||
Sbjct 480412 TCACGAAGATCTG 480400
>seq7954
Length=808569
Score = 127 bits (140), Expect = 4e-24
Identities = 160/220 (73%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301
|||| | ||| || | || || |||||||| ||||| ||| | || || || | || |
Sbjct 793861 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTAC 793802
Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361
|||||||| | |||||| || ||||| || || ||||| || || || ||||| ||||
Sbjct 793801 GGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTT 793742
Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421
|||| || || ||||| ||||| | || || ||||||| | ||| || || | |
Sbjct 793741 CCTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCG 793682
Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||| || || | |||||| || || |||| |||
Sbjct 793681 TGATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642
>seq7963
Length=681008
Score = 114 bits (126), Expect = 2e-20
Identities = 112/145 (77%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312
|||| || || ||||||||||| |||||||| ||||| || || || | |||||||||
Sbjct 60901 ACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCT 60960
Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372
| |||||| | ||| || ||||| || || ||||| || || ||||| ||||| || ||
Sbjct 60961 AGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 61020
Query 68373 ATCTTTGCCTTGACGGCCTCGATGG 68397
||||| ||||| | | ||| ||||
Sbjct 61021 ATCTTGGCCTTCATGTTCTCAATGG 61045
>seq117227
Length=121535
Score = 104 bits (114), Expect = 4e-17
Identities = 155/219 (71%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 68243 AAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCT 68302
||| | ||| || | || || |||||||| ||||| ||||| || || || | || |
Sbjct 79504 AAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 79445
Query 68303 CCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTC 68362
|||||||| | |||||| | || || || || || || | || || ||||| |||||
Sbjct 79444 GCCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTC 79385
Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGT 68422
||| || || ||||| ||||| || || || ||||| | | ||| || | | ||
Sbjct 79384 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGT 79325
Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||||| || || | |||| | ||||| ||||| ||
Sbjct 79324 GATGGTTTTCCCTGT-AAGGTCCTCACGAAAATCTGAAT 79287
>seq108371
Length=73112
Score = 95.1 bits (104), Expect = 2e-14
Identities = 145/203 (71%), Gaps = 9/203 (4%)
Strand=Plus/Minus
Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGA--GAGTGTCCTCCCATCTTCTAACTGCTTCC 68322
||||||| ||| |||||||| | ||| ||||||| |||| || | || || |
Sbjct 52700 GTGGACTATTTCTGGATGTTGTCGCTGGATGGAGTGTCA--CCATGCTCCATCTATTTTC 52643
Query 68323 CGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCT 68382
| |||||| |||| || |||| |||| ||| |||||| ||||||| ||||| ||||
Sbjct 52642 CTATGAATATCAGTCACTGCTGGTTGGGTAGAAAGCCTTCTTTGTCTTCGATCTTAGCCT 52583
Query 68383 TGACGGCCTCGATGGTGTCTGCTGATTCT----ACTTCCAAGGTGATGGTTTTTCCCGTG 68438
| || ||| ||||| | ||||| || ||| ||||||||| || ||| |
Sbjct 52582 TCACATTCTCTGTGGTGACACTGGATTCAGAAGACA-CCAGGGTGATGGTCTTGCCCATT 52524
Query 68439 AGGGTCTTGACGAATATCTGCAT 68461
|||||||| | ||||||||||||
Sbjct 52523 AGGGTCTTCATGAATATCTGCAT 52501
>seq97151
Length=436015
Score = 89.7 bits (98), Expect = 9e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417
|||||||||||||| ||||| |||||||| |||||||||||| | || || ||
Sbjct 143197 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 143138
Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| |||||||| || ||||| |||||||| || || ||||||||
Sbjct 143137 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 143094
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 920247189615560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |