Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq75922 154 3e-32 seq97228 143 5e-29 seq66478 143 5e-29 seq66268 136 7e-27 seq7954 127 4e-24 seq7963 114 2e-20 seq117227 104 4e-17 seq108371 95.1 2e-14 seq97151 89.7 9e-13 >seq75922 Length=371470 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 5/218 (2%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| ||| || ||||||||||| |||||||| ||||| || || || | |||||||| Sbjct 193744 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 193803 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGG-----GTGGAATGCCTTCCTTGT 68367 | |||||| ||||| || || || || |||||||||| | || ||||| ||||| | Sbjct 193804 AGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTAT 193863 Query 68368 CTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGG 68427 | || ||||| |||||||| ||| |||| ||| | || ||||||| |||||||| Sbjct 193864 CCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGATGG 193923 Query 68428 TTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 | || | || |||||||| | ||| ||||||||| || Sbjct 193924 TCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTTTG 193961 >seq97228 Length=228612 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| | ||| || | || || |||||||| ||||| ||||| || || || Sbjct 211792 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 211733 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| | |||||| || ||||| || || ||||| || || || ||| Sbjct 211732 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGA 211673 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| || || || ||||| ||||| || || || ||||| | | ||| || Sbjct 211672 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 211613 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||||| ||| | |||||||| ||||| |||||||| Sbjct 211612 TCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566 >seq66478 Length=146994 Score = 143 bits (158), Expect = 5e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 68258 GTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTG 68317 ||| || ||||||||||| |||||||| || || || || || | |||||||| | ||| Sbjct 11445 GTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTG 11386 Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377 ||| || || || ||||||| || ||||| || || ||| | || || | || ||||| Sbjct 11385 CTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTT 11326 Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437 |||||||| ||| |||||||| | || ||||||| ||||||||| || || || Sbjct 11325 GGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGT 11266 Query 68438 GAGGGTCTTGACGAATATCTGCAT 68461 |||||||| || || |||||||| Sbjct 11265 CAGGGTCTTCACAAAGATCTGCAT 11242 Score = 136 bits (150), Expect = 7e-27 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 68244 AGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTC 68303 || || || |||| ||| || ||||||||||| |||||||| || || || || || | Sbjct 11231 AGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAG 11172 Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||||| | |||||| || || || ||||||| || ||||| || || ||| | || Sbjct 11171 CCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCT 11112 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 || || || ||||| |||||||| ||| |||||||| | || || || | |||| Sbjct 11111 TTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTG 11052 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 ||||| || || || |||||||| | ||| || | |||| || Sbjct 11051 ATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTTG 11010 >seq66268 Length=907216 Score = 136 bits (150), Expect = 7e-27 Identities = 146/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 68266 TGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGG 68325 ||||| |||| |||| ||| || || || || || | ||||| || | |||||| || | Sbjct 480592 TGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTGCTTGCCAG 480533 Query 68326 CGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGA 68385 | ||||| || || || || || ||| | ||||||||||||||||| ||||| ||||||| Sbjct 480532 CAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA 480473 Query 68386 CGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCT 68445 | ||| |||||||| | || || || | |||||||| || ||||| ||||||| Sbjct 480472 CATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCT 480413 Query 68446 TGACGAATATCTG 68458 | ||||| ||||| Sbjct 480412 TCACGAAGATCTG 480400 >seq7954 Length=808569 Score = 127 bits (140), Expect = 4e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 68242 GAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCC 68301 |||| | ||| || | || || |||||||| ||||| ||| | || || || | || | Sbjct 793861 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTAC 793802 Query 68302 TCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTT 68361 |||||||| | |||||| || ||||| || || ||||| || || || ||||| |||| Sbjct 793801 GGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTT 793742 Query 68362 CCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGG 68421 |||| || || ||||| ||||| | || || ||||||| | ||| || || | | Sbjct 793741 CCTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCG 793682 Query 68422 TGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||| || || | |||||| || || |||| ||| Sbjct 793681 TGATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642 >seq7963 Length=681008 Score = 114 bits (126), Expect = 2e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||| || || ||||||||||| |||||||| ||||| || || || | ||||||||| Sbjct 60901 ACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCT 60960 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | |||||| | ||| || ||||| || || ||||| || || ||||| ||||| || || Sbjct 60961 AGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 61020 Query 68373 ATCTTTGCCTTGACGGCCTCGATGG 68397 ||||| ||||| | | ||| |||| Sbjct 61021 ATCTTGGCCTTCATGTTCTCAATGG 61045 >seq117227 Length=121535 Score = 104 bits (114), Expect = 4e-17 Identities = 155/219 (71%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 68243 AAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCT 68302 ||| | ||| || | || || |||||||| ||||| ||||| || || || | || | Sbjct 79504 AAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 79445 Query 68303 CCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTC 68362 |||||||| | |||||| | || || || || || || | || || ||||| ||||| Sbjct 79444 GCCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTC 79385 Query 68363 CTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGT 68422 ||| || || ||||| ||||| || || || ||||| | | ||| || | | || Sbjct 79384 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGT 79325 Query 68423 GATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||||||| || || | |||| | ||||| ||||| || Sbjct 79324 GATGGTTTTCCCTGT-AAGGTCCTCACGAAAATCTGAAT 79287 >seq108371 Length=73112 Score = 95.1 bits (104), Expect = 2e-14 Identities = 145/203 (71%), Gaps = 9/203 (4%) Strand=Plus/Minus Query 68265 GTGGACTCTTTTTGGATGTTATAATCGGA--GAGTGTCCTCCCATCTTCTAACTGCTTCC 68322 ||||||| ||| |||||||| | ||| ||||||| |||| || | || || | Sbjct 52700 GTGGACTATTTCTGGATGTTGTCGCTGGATGGAGTGTCA--CCATGCTCCATCTATTTTC 52643 Query 68323 CGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCT 68382 | |||||| |||| || |||| |||| ||| |||||| ||||||| ||||| |||| Sbjct 52642 CTATGAATATCAGTCACTGCTGGTTGGGTAGAAAGCCTTCTTTGTCTTCGATCTTAGCCT 52583 Query 68383 TGACGGCCTCGATGGTGTCTGCTGATTCT----ACTTCCAAGGTGATGGTTTTTCCCGTG 68438 | || ||| ||||| | ||||| || ||| ||||||||| || ||| | Sbjct 52582 TCACATTCTCTGTGGTGACACTGGATTCAGAAGACA-CCAGGGTGATGGTCTTGCCCATT 52524 Query 68439 AGGGTCTTGACGAATATCTGCAT 68461 |||||||| | |||||||||||| Sbjct 52523 AGGGTCTTCATGAATATCTGCAT 52501 >seq97151 Length=436015 Score = 89.7 bits (98), Expect = 9e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 68358 CCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCC 68417 |||||||||||||| ||||| |||||||| |||||||||||| | || || || Sbjct 143197 CCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCA 143138 Query 68418 AAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||||||| || ||||| |||||||| || || |||||||| Sbjct 143137 AGAGTGATGGTCTTGCCCGTCAGGGTCTTCACAAAGATCTGCAT 143094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 920247189615560