Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq14694 91.5 3e-13
seq44856 87.8 3e-12
>seq14694
Length=1798513
Score = 91.5 bits (100), Expect = 3e-13
Identities = 98/127 (77%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| |||||| ||||||| || || ||||||||||| ||| | || || || || ||||
Sbjct 774221 TGGTGGCCTTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCT 774162
Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||||||| | | || | | |||||| || || || || || || || || || |||||
Sbjct 774161 GGCTCAAG-AAACGGGGACTGATGCCTGGCCTTACGTTTTCCAATGAGCTTATTAGCAGA 774103
Query 42825 GACGAGG 42831
|||||||
Sbjct 774102 GACGAGG 774096
>seq44856
Length=74269
Score = 87.8 bits (96), Expect = 3e-12
Identities = 97/127 (76%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| ||||| | || || || ||| | |||||||| || | || || | || ||||
Sbjct 50627 TGGTGGCCTTCGCTGCTGTGGAAGGCGTTTTCTTCTCTGGGTCGTTTGCTGCTATATTCT 50686
Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| ||| ||| || ||||| ||||||||||| || || || ||||||||||||
Sbjct 50687 GGCTGAAGAAGAGAGGCCTC-ATGCCTGGACTCACCTTTTCAAATGAGCTCATCAGCAGG 50745
Query 42825 GACGAGG 42831
|| ||||
Sbjct 50746 GATGAGG 50752
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 942930092458480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |