Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq14694 91.5 3e-13 seq44856 87.8 3e-12 >seq14694 Length=1798513 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| ||||||| || || ||||||||||| ||| | || || || || |||| Sbjct 774221 TGGTGGCCTTTGCCGCCGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCATCAATATTCT 774162 Query 42766 GGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||||||| | | || | | |||||| || || || || || || || || || ||||| Sbjct 774161 GGCTCAAG-AAACGGGGACTGATGCCTGGCCTTACGTTTTCCAATGAGCTTATTAGCAGA 774103 Query 42825 GACGAGG 42831 ||||||| Sbjct 774102 GACGAGG 774096 >seq44856 Length=74269 Score = 87.8 bits (96), Expect = 3e-12 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| ||||| | || || || ||| | |||||||| || | || || | || |||| Sbjct 50627 TGGTGGCCTTCGCTGCTGTGGAAGGCGTTTTCTTCTCTGGGTCGTTTGCTGCTATATTCT 50686 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| || ||||| ||||||||||| || || || |||||||||||| Sbjct 50687 GGCTGAAGAAGAGAGGCCTC-ATGCCTGGACTCACCTTTTCAAATGAGCTCATCAGCAGG 50745 Query 42825 GACGAGG 42831 || |||| Sbjct 50746 GATGAGG 50752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942930092458480