Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq73029 98.7 9e-16 >seq73029 Length=1854 Score = 98.7 bits (108), Expect = 9e-16 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 20249 TGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCC 20308 || |||| ||| || || | |||| ||||||||||||||| || || || |||| ||| Sbjct 1537 TGTGCAATCATGTANGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGCACGCCCAGGCCC 1478 Query 20309 ATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGA 20368 || ||||| |||||||| || ||||| || || ||||| || | | ||||| |||||| Sbjct 1477 ATATCTCCTGACCTCTGGTAAAGCTGGCAAGACAGCTCCCCATTCACCACATAGAATTGA 1418 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || | || || || || || ||||||| Sbjct 1417 CAGAGGGCATGGCAAGGAGGCAGTGCCATCA 1387 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440714200059320