Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 134 3e-26
seq7954 113 1e-19
seq75922 111 4e-19
seq117227 96.9 8e-15
seq66478 96.9 8e-15
>seq97228
Length=228612
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 211792 CCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGAC 211733
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || || ||||| | || || || ||||||||||| | || ||| | ||
Sbjct 211732 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGA 211673
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||||||||||||||| || || || || |||||||||| || | ||| ||
Sbjct 211672 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 211613
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||||||||| || ||||| | || ||||| ||||| ||||||||
Sbjct 211612 TCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq7954
Length=808569
Score = 113 bits (124), Expect = 1e-19
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | || ||||||| ||| || ||||| || | ||||| |
Sbjct 793868 CCACCATGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGAC 793809
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || || || ||||| | || || || ||||||||||| | || ||| | ||
Sbjct 793808 AAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGA 793749
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || |||| |||||||||| || | ||| ||
Sbjct 793748 ATTCCTTCCTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACC 793689
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
||||||||||| || ||||| || | ||||| || || |||| |||
Sbjct 793688 TCGAGCGTGATGGTTTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642
>seq75922
Length=371470
Score = 111 bits (122), Expect = 4e-19
Identities = 145/201 (72%), Gaps = 5/201 (2%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || || || | || ||||| || ||||| | || || || || |||
Sbjct 193762 TCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 193821
Query 288343 ATCAGACGCTGTTGA-----GAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCA 288397
||||| | |||||| || ||||| || || ||||||||||| || || || |
Sbjct 193822 ATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGA 193881
Query 288398 CGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCT 288457
| || || || || || || | || ||||| || ||||| ||||| | |||||| ||||
Sbjct 193882 CATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCT 193941
Query 288458 TGACGAATATCTGCATTATGT 288478
| | ||| ||||||||| |||
Sbjct 193942 TCATGAAGATCTGCATTTTGT 193962
>seq117227
Length=121535
Score = 96.9 bits (106), Expect = 8e-15
Identities = 153/218 (70%), Gaps = 1/218 (0%)
Strand=Plus/Minus
Query 288256 AGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGT 288315
||||| | || ||||||| ||| || ||||| || || ||||| | | || |
Sbjct 79503 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAG 79444
Query 288316 CCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCT 288375
|| ||||| | || || | || |||||||| | ||| | | | || ||||||||
Sbjct 79443 CCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCC 79384
Query 288376 TTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTG 288435
||||||||||| || || || || |||||||||| || | ||| || | |||||||
Sbjct 79383 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTG 79324
Query 288436 ATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || ||||| || || ||| | ||||| ||||| ||
Sbjct 79323 ATGGTTTTCCCTGTAAG-GTCCTCACGAAAATCTGAAT 79287
>seq66478
Length=146994
Score = 96.9 bits (106), Expect = 8e-15
Identities = 138/195 (71%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | || |||| || |||| | || || || || |||
Sbjct 11204 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAG 11145
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
|| || ||||| || | ||||| | |||||||||||||| || || || || ||
Sbjct 11144 ATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTC 11085
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| || | || || | || || || || ||||| ||||| |||||||| ||||| | |
Sbjct 11084 TCAATGGTGTCACTGGGCTCCACCTCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATG 11025
Query 288463 AATATCTGCATTATG 288477
|| || | |||| ||
Sbjct 11024 AAGATTTTCATTTTG 11010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177850158039894
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |