Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq66478 109 5e-19 seq75922 104 2e-17 seq97228 102 8e-17 seq75879 91.5 1e-13 seq66268 87.8 2e-12 seq117227 86.0 6e-12 seq7963 84.2 2e-11 >seq66478 Length=146994 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||| | |||| ||||||||||| Sbjct 11210 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTTCAGCTGCTTGCCA 11151 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||||||||| || || || | ||||| || || || || ||| Sbjct 11150 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCCTGGATCTTGGCCTTG 11091 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || ||||| || | || | |||||||||||||| || Sbjct 11090 ACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTGATGGTCTTGCCGGTCAGGGTC 11031 Query 64427 TTTACGAAAATTTGCATTTT 64446 || | ||| |||| |||||| Sbjct 11030 TTCATGAAGATTTTCATTTT 11011 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || |||||||| || | | |||| | ||||| ||||||||||| Sbjct 11438 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTGCCA 11379 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||||||||| || || || | ||||| | || || || ||| Sbjct 11378 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTGGCCTTG 11319 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || |||||||| | || | ||||||||| |||| || Sbjct 11318 ACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 11259 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 11258 TTCACAAAGATCTGCAT 11242 >seq75922 Length=371470 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 5/205 (2%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | ||||| | ||||| |||||||||||| Sbjct 193756 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 193815 Query 64307 GCATAAATGAGCCGCTGCTGGTCGG-----GAGGAATTCCTTCTTTTTCTTGTATTTTTT 64361 ||| | || |||| ||| ||||||| | || || || || || || || || || Sbjct 193816 GCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTATCCTGGATCTTGG 193875 Query 64362 GCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCA 64421 ||| ||| ||| | | |||| || |||||||| | || | |||||||| ||||| Sbjct 193876 CCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCTGGTCA 193935 Query 64422 AAGTTTTTACGAAAATTTGCATTTT 64446 || || | ||| || |||||||| Sbjct 193936 GGGTCTTCATGAAGATCTGCATTTT 193960 >seq97228 Length=228612 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| | ||| ||||||| || || || |||||||||||||| || | Sbjct 211793 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 211734 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| |||||||| || || | || |||| ||||| || ||||| Sbjct 211733 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 211674 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 |||||||||||| || || || || ||||||| || | || || || || || Sbjct 211673 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 211614 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | ||| || || | | || || |||||||| ||||| || Sbjct 211613 CTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563 >seq75879 Length=626627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315 || |||||||||||||| | | | || || | ||||| ||||||||||| ||| | ||| Sbjct 288547 TTCTGAATGTTGTAATCAGAAAGGCTG-GC-CATCTTCCAGCTGCTTGCCTGCACAGATG 288490 Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375 |||| ||||||||| || | || || | || || || || || ||| ||| ||| Sbjct 288489 AGCCTCTGCTGGTCAGGGGATATGCCATTTTCATCCTGGATCTTGGCCTTCACATTCTCA 288430 Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435 | || |||| || ||||| |||| || | |||||||| ||| || || || || Sbjct 288429 AGGGTGTCACTGGGCTCCAC-TCTAGGGTGATGGTCTTGCAATTCAGGGTCTTCACAAAG 288371 Query 64436 ATTTGCATTTT 64446 |||| |||||| Sbjct 288370 ATTTTCATTTT 288360 >seq66268 Length=907216 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 64233 GCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTT 64292 |||| ||||| | | || |||| || | |||||| || | | |||| | || | Sbjct 480607 GCACCAGATGCAAGATGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCT 480548 Query 64293 CAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTT 64352 | ||||||||||| ||| | || |||| |||||| || || | || ||||| || |||| Sbjct 480547 CCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTT 480488 Query 64353 GTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412 | || || ||| ||| ||| | || |||| || || || || | ||| | ||||| Sbjct 480487 GGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 480428 Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTG 64440 |||| |||| || || ||||| || || Sbjct 480427 TGCCCGTCAGGGTCTTCACGAAGATCTG 480400 >seq117227 Length=121535 Score = 86.0 bits (94), Expect = 6e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287 ||| | ||| ||||||| || || || |||||||||||||| || | | || | | Sbjct 79501 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCC 79442 Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347 ||||| |||||||| | ||| | || |||| ||||| || |||||||||||||| || Sbjct 79441 ATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTT 79382 Query 64348 TTCTTGTATTTTTTGCTTTACA 64369 || || || || ||||||| Sbjct 79381 ATCCTGGATCTTGGCCTTTACA 79360 >seq7963 Length=681008 Score = 84.2 bits (92), Expect = 2e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || ||||| || ||||||||||| | | ||||| | ||||| |||||||||| | Sbjct 60913 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCTAGCTGCTTGCNG 60972 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| | ||||||| ||||||||| || || || || || || || || || || Sbjct 60973 GCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTT 61025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 498899248766120