Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq66478 109 5e-19
seq75922 104 2e-17
seq97228 102 8e-17
seq75879 91.5 1e-13
seq66268 87.8 2e-12
seq117227 86.0 6e-12
seq7963 84.2 2e-11
>seq66478
Length=146994
Score = 109 bits (120), Expect = 5e-19
Identities = 144/200 (72%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || |||||||| || | | |||| | |||| |||||||||||
Sbjct 11210 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTTCAGCTGCTTGCCA 11151
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | ||||| ||||||||||| || || || | ||||| || || || || |||
Sbjct 11150 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCCTGGATCTTGGCCTTG 11091
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || |||| || ||||| || | || | |||||||||||||| ||
Sbjct 11090 ACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTGATGGTCTTGCCGGTCAGGGTC 11031
Query 64427 TTTACGAAAATTTGCATTTT 64446
|| | ||| |||| ||||||
Sbjct 11030 TTCATGAAGATTTTCATTTT 11011
Score = 104 bits (114), Expect = 2e-17
Identities = 141/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || |||||||| || | | |||| | ||||| |||||||||||
Sbjct 11438 GTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTGCCA 11379
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366
||| | ||||| ||||||||||| || || || | ||||| | || || || |||
Sbjct 11378 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTGGCCTTG 11319
Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426
||| ||| | || |||| || |||||||| | || | ||||||||| |||| ||
Sbjct 11318 ACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTC 11259
Query 64427 TTTACGAAAATTTGCAT 64443
|| || || || |||||
Sbjct 11258 TTCACAAAGATCTGCAT 11242
>seq75922
Length=371470
Score = 104 bits (114), Expect = 2e-17
Identities = 146/205 (71%), Gaps = 5/205 (2%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || ||||||||||| | | ||||| | ||||| ||||||||||||
Sbjct 193756 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCG 193815
Query 64307 GCATAAATGAGCCGCTGCTGGTCGG-----GAGGAATTCCTTCTTTTTCTTGTATTTTTT 64361
||| | || |||| ||| ||||||| | || || || || || || || || ||
Sbjct 193816 GCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTATCCTGGATCTTGG 193875
Query 64362 GCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCA 64421
||| ||| ||| | | |||| || |||||||| | || | |||||||| |||||
Sbjct 193876 CCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCTGGTCA 193935
Query 64422 AAGTTTTTACGAAAATTTGCATTTT 64446
|| || | ||| || ||||||||
Sbjct 193936 GGGTCTTCATGAAGATCTGCATTTT 193960
>seq97228
Length=228612
Score = 102 bits (112), Expect = 8e-17
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275
||| || || | ||| | ||| ||||||| || || || |||||||||||||| || |
Sbjct 211793 ACCACCACGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGA 211734
Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335
| || || | ||||| |||||||| || || | || |||| ||||| || |||||
Sbjct 211733 CAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGG 211674
Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395
|||||||||||| || || || || ||||||| || | || || || || ||
Sbjct 211673 AATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAAC 211614
Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446
|| | || | ||| || || | | || || |||||||| ||||| ||
Sbjct 211613 CTCGAGCGTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCATCTT 211563
>seq75879
Length=626627
Score = 91.5 bits (100), Expect = 1e-13
Identities = 137/191 (72%), Gaps = 3/191 (2%)
Strand=Plus/Minus
Query 64256 TTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATG 64315
|| |||||||||||||| | | | || || | ||||| ||||||||||| ||| | |||
Sbjct 288547 TTCTGAATGTTGTAATCAGAAAGGCTG-GC-CATCTTCCAGCTGCTTGCCTGCACAGATG 288490
Query 64316 AGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCC 64375
|||| ||||||||| || | || || | || || || || || ||| ||| |||
Sbjct 288489 AGCCTCTGCTGGTCAGGGGATATGCCATTTTCATCCTGGATCTTGGCCTTCACATTCTCA 288430
Query 64376 ACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAA 64435
| || |||| || ||||| |||| || | |||||||| ||| || || || ||
Sbjct 288429 AGGGTGTCACTGGGCTCCAC-TCTAGGGTGATGGTCTTGCAATTCAGGGTCTTCACAAAG 288371
Query 64436 ATTTGCATTTT 64446
|||| ||||||
Sbjct 288370 ATTTTCATTTT 288360
>seq66268
Length=907216
Score = 87.8 bits (96), Expect = 2e-12
Identities = 144/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 64233 GCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTT 64292
|||| ||||| | | || |||| || | |||||| || | | |||| | || |
Sbjct 480607 GCACCAGATGCAAGATGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCT 480548
Query 64293 CAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTT 64352
| ||||||||||| ||| | || |||| |||||| || || | || ||||| || ||||
Sbjct 480547 CCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTT 480488
Query 64353 GTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCT 64412
| || || ||| ||| ||| | || |||| || || || || | ||| | |||||
Sbjct 480487 GGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCT 480428
Query 64413 TGCCGGTCAAAGTTTTTACGAAAATTTG 64440
|||| |||| || || ||||| || ||
Sbjct 480427 TGCCCGTCAGGGTCTTCACGAAGATCTG 480400
>seq117227
Length=121535
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 64228 TCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGC 64287
||| | ||| ||||||| || || || |||||||||||||| || | | || | |
Sbjct 79501 TCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACAGCC 79442
Query 64288 GTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTT 64347
||||| |||||||| | ||| | || |||| ||||| || |||||||||||||| ||
Sbjct 79441 ATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTCCTT 79382
Query 64348 TTCTTGTATTTTTTGCTTTACA 64369
|| || || || |||||||
Sbjct 79381 ATCCTGGATCTTGGCCTTTACA 79360
>seq7963
Length=681008
Score = 84.2 bits (92), Expect = 2e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306
|| || ||||| || ||||||||||| | | ||||| | ||||| |||||||||| |
Sbjct 60913 GTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCTAGCTGCTTGCNG 60972
Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| | ||||||| ||||||||| || || || || || || || || || ||
Sbjct 60973 GCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGGATCTT 61025
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 498899248766120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |