Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 91.5 1e-13
seq7954 82.4 8e-11
>seq97228
Length=228612
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461
||| || | ||| | | | ||||||||||||||||||||||| || |||||| ||
Sbjct 211778 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATC 211719
Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
|| || || ||||| | |||| || | || || || ||||| || |||||||| ||
Sbjct 211718 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCTTTATC 211659
Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581
||| || |||| | ||| | ||||| | | || ||||||| ||| | ||
Sbjct 211658 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGT 211599
Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| || | || || || || |||||||||||
Sbjct 211598 TTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq7954
Length=808569
Score = 82.4 bits (90), Expect = 8e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 138402 CAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTC 138461
||| || | ||| | | | ||||||||||||||| ||||||| || |||||| ||
Sbjct 793854 CAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGGCCATC 793795
Query 138462 CTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTC 138521
|| || || ||||| | |||| || | || || || ||||| || ||||| || ||
Sbjct 793794 TTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 793735
Query 138522 GGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGT 138581
||| || || || | ||| | ||||| | | || ||||||| ||| | ||
Sbjct 793734 CTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTGATGGT 793675
Query 138582 TTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| || || | || || |||||||||| |||
Sbjct 793674 TTTCCCTGTAAAGGTCTTCACAAAAATCTCCAT 793642
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495521895856560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |