Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq55139 167 3e-36 seq76021 102 1e-16 >seq55139 Length=370476 Score = 167 bits (184), Expect = 3e-36 Identities = 208/285 (73%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| ||||||||||| ||| ||||| |||||||||| || || || | ||| Sbjct 202195 AAGGGACAACCCTTCACATTATTACAGATGAGAGACTGAATGGAAGCAGTGTTGATGATC 202136 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | |||||||| || || || || ||||| || |||||||| || || |||||| Sbjct 202135 TTAAAACCTACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 202076 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| || || || || || || | ||| |||| || ||| Sbjct 202075 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 202016 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 || ||| | ||||| || || || || | | | ||| || || || | || |||| | Sbjct 202015 ATAGCATCTGGACGAGGCTTCTCCACCAGCAGGGCAGGATACAGCTCCATGGCGTCGATG 201956 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || | ||||||||||||||||| || || || |||||||| ||| Sbjct 201955 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCT 201911 Score = 158 bits (174), Expect = 2e-33 Identities = 212/293 (72%), Gaps = 4/293 (1%) Strand=Plus/Minus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || || |||||||| |||||||| ||||| || |||| | |||||||| ||||| Sbjct 201103 CCGGCCAGCGATCTGTCTGGTGAACGACTCAACAAACTGGGTGAGTCCGTGCTCAATGAG 201044 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 |||||| |||||||| | ||| |||| | | | |||| | ||| | || |||| Sbjct 201043 GATGGAGTTGTTGTAGAGGAACTGTTTGAAGCTGTACTCCTGGTCTTCGATCTGAAACGT 200984 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 ||||||| ||| | |||||| | ||||| || ||||| || || || || |||||||| Sbjct 200983 GTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCAGCTGCAATGCGGTTCTG 200924 Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 |||||| || | ||| ||| || | ||| ||||| || | || | ||||||||| Sbjct 200923 GTACTGGAACTGCTGGT--TGAAAAGCAGCTCTGGGTCGAACTTGAGTTTGAAGTGGTAA 200866 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722 ||||| || ||||| || || | | ||| | ||| || || || || || || Sbjct 200865 CCGCTCAGGTGCTGCACGTAGTCTTCGATCACAATCTTGATAGTCTCTCCTGT 200813 Score = 147 bits (162), Expect = 3e-30 Identities = 171/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 || || || || ||| ||| || |||| || || || || ||||| ||||||||||| Sbjct 200632 GTCGTCTGGAATAACCTCTCATCGTCCCACTCAGGATGCTCCTGTTTAAGAACATCGCAN 200573 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 || ||||||||||| | |||||| || || || |||||||| | ||| ||||| | |||| Sbjct 200572 ACTCTGTTGTGTTCCCGCAGCCAGATTGTAGCATACATCATCAGACCAGGCACCAGACCA 200513 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 || || || | |||||| ||||| || || | || || | || | || | ||| Sbjct 200512 AAGACCTCCTGCCCCACAGCAAACCGTAGGTGCTCAGGGGTNTGAGGGGGGTAGATCATT 200453 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 | |||||| || |||||||| ||||||||||||| | || ||||| |||| Sbjct 200452 TCCACCTGAGTGTCTTTGACTGTGGGGGGATACACCTNTCCATCAATGACCT 200401 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| ||||| | |||||||| | ||| ||| | || Sbjct 199259 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGTTTCTGATCTGTCTTGAA 199200 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| || ||||| || ||||| Sbjct 199199 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGAGGATC 199140 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297 ||||| || || ||| | || ||| || |||| || | | ||||||| || || Sbjct 199139 AGGGATGAATTTCTTCCTTAGAAGAACCTTTTCCAGAACTTCTTTTGAATCCGGAAG 199083 Score = 91.5 bits (100), Expect = 2e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| || || ||||| || ||| ||| Sbjct 198514 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACAGGAGGAAGGACTCTGGTA 198455 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 || ||||| || || || || || |||||| | ||||| ||||| | | |||||| Sbjct 198454 TAGTAGGAGAGGTTGGAGAAGGCCTCCCAGTTCTTGTAACCATAGTGCACGTTGTAAGTT 198395 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || |||||||||| || | || |||||| Sbjct 198394 GGTGGACTGTCAACCAAATGTGATCTGGCT 198365 >seq76021 Length=182335 Score = 102 bits (112), Expect = 1e-16 Identities = 171/245 (70%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 || || || || | || || || || || || || || |||||||| ||||| ||| | Sbjct 116497 GCTGTGTTGACAAGGTTGAAGCCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCT 116438 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 || || || ||| || ||| ||| || || | |||||| |||||||| | ||| || Sbjct 116437 GGAGAACAAATGGGATTTCCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCGATCTCTATC 116378 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTAGAG 9114 || ||||| || ||||||| ||| | ||||| | || | |||| | ||||| Sbjct 116377 ATACTCTCCCCAAAGATGGAGTTGGGCTGACACTTTTCCA-GAAGCAGCCCTGGGTAGAA 116319 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | ||| || | ||| || || | | |||||||| ||||| ||||||||||| || Sbjct 116318 CTCTAAAGCATCAATGTCACCGTATAACTCCTCCAACTCAGCAGCCATCTCCTTCTCTCC 116259 Query 9175 TACAA 9179 | ||| Sbjct 116258 TGCAA 116254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 722648080218200