Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq55139 167 3e-36
seq76021 102 1e-16
>seq55139
Length=370476
Score = 167 bits (184), Expect = 3e-36
Identities = 208/285 (73%), Gaps = 0/285 (0%)
Strand=Plus/Minus
Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950
|| ||||| ||||||||||| ||| ||||| |||||||||| || || || | |||
Sbjct 202195 AAGGGACAACCCTTCACATTATTACAGATGAGAGACTGAATGGAAGCAGTGTTGATGATC 202136
Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010
| |||||||| || || || || ||||| || |||||||| || || ||||||
Sbjct 202135 TTAAAACCTACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACAGATGGGA 202076
Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070
|| |||| || ||||||||||| || || || || || || | ||| |||| || |||
Sbjct 202075 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 202016
Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130
|| ||| | ||||| || || || || | | | ||| || || || | || |||| |
Sbjct 202015 ATAGCATCTGGACGAGGCTTCTCCACCAGCAGGGCAGGATACAGCTCCATGGCGTCGATG 201956
Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
|| | ||||||||||||||||| || || || |||||||| |||
Sbjct 201955 TCACTGTAGAGGGCTTCCAACTCTGCGGCCATTTCCTTCTCTCCT 201911
Score = 158 bits (174), Expect = 2e-33
Identities = 212/293 (72%), Gaps = 4/293 (1%)
Strand=Plus/Minus
Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491
||| || || |||||||| |||||||| ||||| || |||| | |||||||| |||||
Sbjct 201103 CCGGCCAGCGATCTGTCTGGTGAACGACTCAACAAACTGGGTGAGTCCGTGCTCAATGAG 201044
Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551
|||||| |||||||| | ||| |||| | | | |||| | ||| | || ||||
Sbjct 201043 GATGGAGTTGTTGTAGAGGAACTGTTTGAAGCTGTACTCCTGGTCTTCGATCTGAAACGT 200984
Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611
||||||| ||| | |||||| | ||||| || ||||| || || || || ||||||||
Sbjct 200983 GTCAGGCAGCAGGGGGTGCCAGTGATAGAGTGTGTTGAATTCAGCTGCAATGCGGTTCTG 200924
Query 9612 GTACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669
|||||| || | ||| ||| || | ||| ||||| || | || | |||||||||
Sbjct 200923 GTACTGGAACTGCTGGT--TGAAAAGCAGCTCTGGGTCGAACTTGAGTTTGAAGTGGTAA 200866
Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGT 9722
||||| || ||||| || || | | ||| | ||| || || || || || ||
Sbjct 200865 CCGCTCAGGTGCTGCACGTAGTCTTCGATCACAATCTTGATAGTCTCTCCTGT 200813
Score = 147 bits (162), Expect = 3e-30
Identities = 171/232 (74%), Gaps = 0/232 (0%)
Strand=Plus/Minus
Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795
|| || || || ||| ||| || |||| || || || || ||||| |||||||||||
Sbjct 200632 GTCGTCTGGAATAACCTCTCATCGTCCCACTCAGGATGCTCCTGTTTAAGAACATCGCAN 200573
Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855
|| ||||||||||| | |||||| || || || |||||||| | ||| ||||| | ||||
Sbjct 200572 ACTCTGTTGTGTTCCCGCAGCCAGATTGTAGCATACATCATCAGACCAGGCACCAGACCA 200513
Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915
|| || || | |||||| ||||| || || | || || | || | || | |||
Sbjct 200512 AAGACCTCCTGCCCCACAGCAAACCGTAGGTGCTCAGGGGTNTGAGGGGGGTAGATCATT 200453
Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967
| |||||| || |||||||| ||||||||||||| | || ||||| ||||
Sbjct 200452 TCCACCTGAGTGTCTTTGACTGTGGGGGGATACACCTNTCCATCAATGACCT 200401
Score = 95.1 bits (104), Expect = 2e-14
Identities = 127/177 (72%), Gaps = 0/177 (0%)
Strand=Plus/Minus
Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180
|||||||||||| |||| |||| ||||| | |||||||| | ||| ||| | ||
Sbjct 199259 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGTTTCTGATCTGTCTTGAA 199200
Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240
||| || || || ||||| || | || || || ||||||| || ||||| || |||||
Sbjct 199199 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCTTGAGGATC 199140
Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAG 10297
||||| || || ||| | || ||| || |||| || | | ||||||| || ||
Sbjct 199139 AGGGATGAATTTCTTCCTTAGAAGAACCTTTTCCAGAACTTCTTTTGAATCCGGAAG 199083
Score = 91.5 bits (100), Expect = 2e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446
||||||||||| || | ||||| ||||||||| || || ||||| || ||| |||
Sbjct 198514 TCACCTTTCACACCCATGGGAGTTGGGCAGTCATCAGCTACAGGAGGAAGGACTCTGGTA 198455
Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506
|| ||||| || || || || || |||||| | ||||| ||||| | | ||||||
Sbjct 198454 TAGTAGGAGAGGTTGGAGAAGGCCTCCCAGTTCTTGTAACCATAGTGCACGTTGTAAGTT 198395
Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| |||||||||| || | || ||||||
Sbjct 198394 GGTGGACTGTCAACCAAATGTGATCTGGCT 198365
>seq76021
Length=182335
Score = 102 bits (112), Expect = 1e-16
Identities = 171/245 (70%), Gaps = 2/245 (1%)
Strand=Plus/Minus
Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995
|| || || || | || || || || || || || || |||||||| ||||| ||| |
Sbjct 116497 GCTGTGTTGACAAGGTTGAAGCCCACATCACCCCCAAATGTGCTGGGCTTCCAATACTCT 116438
Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055
|| || || ||| || ||| ||| || || | |||||| |||||||| | ||| ||
Sbjct 116437 GGAGAACAAATGGGATTTCCCAGGAGACCCTTGAGGGAAAAGGGAGCCCCGATCTCTATC 116378
Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTAGAG 9114
|| ||||| || ||||||| ||| | ||||| | || | |||| | |||||
Sbjct 116377 ATACTCTCCCCAAAGATGGAGTTGGGCTGACACTTTTCCA-GAAGCAGCCCTGGGTAGAA 116319
Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174
|| | ||| || | ||| || || | | |||||||| ||||| ||||||||||| ||
Sbjct 116318 CTCTAAAGCATCAATGTCACCGTATAACTCCTCCAACTCAGCAGCCATCTCCTTCTCTCC 116259
Query 9175 TACAA 9179
| |||
Sbjct 116258 TGCAA 116254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 722648080218200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |