Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 154 3e-32
seq7954 147 5e-30
seq117227 125 2e-23
seq66478 113 1e-19
seq21879 91.5 3e-13
seq97156 89.7 1e-12
seq75922 89.7 1e-12
seq17433 89.7 1e-12
seq7963 89.7 1e-12
seq66268 87.8 4e-12
seq9545 87.8 4e-12
seq117087 84.2 5e-11
seq76410 84.2 5e-11
>seq97228
Length=228612
Score = 154 bits (170), Expect = 3e-32
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468
|||||||||| ||||| || || || ||||||||||| | ||||||||||| ||||||
Sbjct 211786 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 211727
Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| ||||||||||||||||| || |||||||| || | ||||| || ||| |||||||
Sbjct 211726 CGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCT 211667
Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588
||| ||||| ||||| ||| || ||| | ||||| | | ||| || || | |
Sbjct 211666 TCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 211607
Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || ||| | || || ||||| ||||| ||
Sbjct 211606 GTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTG 211569
Score = 91.5 bits (100), Expect = 3e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994
|| |||||||| || |||||| |||||||||| | |||||| | || |||||| | ||
Sbjct 211692 CTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATTCAA 211751
Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029
|| ||||| || ||||| ||||| |||||||||||
Sbjct 211752 AAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCG 211786
>seq7954
Length=808569
Score = 147 bits (162), Expect = 5e-30
Identities = 161/214 (75%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
||||||||| ||||| || || || ||||||||||| | | ||||||||| |||||| |
Sbjct 793861 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTAC 793802
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
||||||||||||||||| || |||||||| || | ||||| || ||| ||||||||
Sbjct 793801 GGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTT 793742
Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589
| ||||| ||||| ||||| ||| | ||||||| | ||| || || | ||
Sbjct 793741 CCTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCG 793682
Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623
|||| || || || || | || |||||||||||
Sbjct 793681 TGATGGTTTTCCCTGTAAAGGTCTTCACAAAAAT 793648
>seq117227
Length=121535
Score = 125 bits (138), Expect = 2e-23
Identities = 158/216 (73%), Gaps = 1/216 (0%)
Strand=Plus/Minus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
|||||||| ||||| || || || ||||||||||| | ||||||||||| |||||| |
Sbjct 79504 AAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 79445
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
||||||||||||||||| | || ||||| || | ||||| || ||| |||||||||
Sbjct 79444 GCCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTC 79385
Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590
||||| ||||| ||| || ||| | ||||| | | ||| || | | |||
Sbjct 79384 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGT 79325
Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||| || || || || || || |||| ||||| ||
Sbjct 79324 GATGGTTTTCCCTGTAAG-GTCCTCACGAAAATCTG 79290
>seq66478
Length=146994
Score = 113 bits (124), Expect = 1e-19
Identities = 153/212 (72%), Gaps = 1/212 (0%)
Strand=Plus/Minus
Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474
||||| || |||| || || ||||| || |||| ||||||||||| | ||| | |||
Sbjct 11455 CTCAG-ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCA 11397
Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534
|||||||||||||| || || |||||||| ||||||||||| || || | |||
Sbjct 11396 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTA 11337
Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594
|||| ||||| ||| || || | |||||| | | || || |||| |||||
Sbjct 11336 CCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATG 11277
Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| || || || || |||||||| || ||
Sbjct 11276 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTG 11245
Score = 107 bits (118), Expect = 5e-18
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479
||| ||||| || || ||||| || |||| ||||||||||| | ||| | |||||||
Sbjct 11223 GACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTT 11164
Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539
||||||||| || || |||||||| ||||||||||| || || | ||| |||||
Sbjct 11163 CAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCCTG 11104
Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599
||||| ||| || || | |||||| | | || || || | ||||| |||||
Sbjct 11103 GATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTGATGGTCTT 11044
Query 199600 ACCCGTGAGAGTTTTCACAAAAATTT 199625
|| || || || |||| || ||||
Sbjct 11043 GCCGGTCAGGGTCTTCATGAAGATTT 11018
>seq21879
Length=1267
Score = 91.5 bits (100), Expect = 3e-13
Identities = 102/135 (76%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
||||||||| ||||| || || || ||||||||||| | | || |||||| |||| | |
Sbjct 686 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGGAGTCAGACAAATTAC 745
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
||||||||| |||| || || ||||| || | ||||| || ||| ||||||||
Sbjct 746 -AGAATCTTCCAGATGCTCACCAGCCAAGATCAGTCTGTGCTGATCAGGAGGAATTCCTT 804
Query 199530 CTCGCTCCTGAATCT 199544
|| ||| ||| ||||
Sbjct 805 CTTGCTGCTGGATCT 819
>seq97156
Length=413001
Score = 89.7 bits (98), Expect = 1e-12
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|| |||||||| ||||| || ||| | ||||| ||||| ||||||||||||| |||| |
Sbjct 395488 TCAAAGTCTCAACACAAGATGAAGAATGGACTCTTTTTGAACGTTGTAGTCAGACAAA-T 395430
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
||| |||||||||||||| || | ||||| | | ||| ||| | || ||||||
Sbjct 395429 ATGTCCGTCTTCCAGCTGCTTACCCAC-AAGATTGGCCTCTGTTGGCCAAGAGGAATTCC 395371
Query 199528 TTCTCGCTCCTGAATCTT 199545
||| ||||| |||||
Sbjct 395370 TTCCTCATCCTGGATCTT 395353
>seq75922
Length=371470
Score = 89.7 bits (98), Expect = 1e-12
Identities = 154/223 (69%), Gaps = 8/223 (4%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| ||||| || || ||||| || |||| |||||| |||| | ||| | ||||||
Sbjct 193741 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 193800
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAA-----ATTCCTTCTC 199532
||||||||||| ||||| ||||| || | ||| ||||| || | | || || ||
Sbjct 193801 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCT 193860
Query 199533 GCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592
||||| ||||| ||| || || | || ||| | | || || |||| ||||
Sbjct 193861 TATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGA 193920
Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635
| ||||| | || || || |||| || || || ||||||
Sbjct 193921 TGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTG---CATTTT 193960
>seq17433
Length=217209
Score = 89.7 bits (98), Expect = 1e-12
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499
||||||| | ||||||||||| |||||| | ||||||||||||||||| || |||||||
Sbjct 167047 CCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGA 166988
Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528
| || | ||||| || ||| |||||||
Sbjct 166987 TCAGCCTTTGCTGATCAGGAGGAATTCCT 166959
>seq7963
Length=681008
Score = 89.7 bits (98), Expect = 1e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477
||||| |||| || || ||||| || |||| |||||| |||| | ||| | ||||||
Sbjct 60898 AGGACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 60957
Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518
|| |||||||| | ||| |||||||| | ||||||||||||
Sbjct 60958 TCTAGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGG 60998
>seq66268
Length=907216
Score = 87.8 bits (96), Expect = 4e-12
Identities = 133/188 (71%), Gaps = 1/188 (1%)
Strand=Plus/Minus
Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498
||||| |||||||||||||| | || ||| | ||||| ||||||||||| || || ||
Sbjct 480587 CCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTGCTTGCCAGCAAAT 480528
Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558
|| || | |||||| || || | || ||||| || || ||||| ||| ||
Sbjct 480527 ATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTC 480468
Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618
|| | |||||| | | || || || | ||||| ||||| ||||| || || |||||
Sbjct 480467 TCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACG 480408
Query 199619 AAAATTTG 199626
|| || ||
Sbjct 480407 AAGATCTG 480400
>seq9545
Length=18559
Score = 87.8 bits (96), Expect = 4e-12
Identities = 102/135 (76%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
||||||||| ||||| | ||||| |||||| |||| | ||||||||||| |||||| |
Sbjct 10942 AAGTCTCAGCACAAGATA-AGAGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTACA 11000
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
|||||||| |||||||| || || | ||| | | ||||| || ||| | | || ||
Sbjct 11001 GCCATCTTCAAGCTGCTTACCAGC-AGGATCAACCTCTGCTCATCAGGAGGAGTCCCGTC 11059
Query 199531 TCGCTCCTGAATCTT 199545
|||||||||||
Sbjct 11060 CTTATCCTGAATCTT 11074
>seq117087
Length=234790
Score = 84.2 bits (92), Expect = 5e-11
Identities = 149/215 (69%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469
||||||||| ||| | || || || |||||| |||| ||| ||||||| |||||| |
Sbjct 123128 GAAGTCTCAACACAGGATGAAGGGTAGACTCCATTTGAGTGTTATAGTCAGACAAAGTGC 123069
Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529
| |||||||||||||| || || |||| || | |||| || ||| ||| | |
Sbjct 123068 AAC-ATCTTCCAGCTGCTGGCCAGCAAAGAGCAGCCTTAGCTGATCAGGAGGAATGCGTC 123010
Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589
| ||||||||||| ||| || ||| | ||||||| | ||| || | | |
Sbjct 123009 CCTCATCCTGAATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTTGAGCA 122950
Query 199590 TGATCGTCTT-ACCCGTGAGAGTTTTCACAAAAAT 199623
| || ||||| |||| |||| || || | |||||
Sbjct 122949 TTATGGTCTTCACCCATGAGGGTCTTTAAGAAAAT 122915
>seq76410
Length=63831
Score = 84.2 bits (92), Expect = 5e-11
Identities = 101/135 (75%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470
||||||||| ||||| | ||||| ||||||||||| | |||| |||||| |||||| |
Sbjct 42144 AAGTCTCAGCACAAGATA-AGAGTAGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACA 42202
Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530
|||||||||||||||| || || | ||| | | ||||| || || | | || ||
Sbjct 42203 GTCATCTTCCAGCTGCTTACCAGC-AGGATCAACCTCTGCTCATCAAGAGGAGTCCCCTC 42261
Query 199531 TCGCTCCTGAATCTT 199545
|||||||||||
Sbjct 42262 CTTATCCTGAATCTT 42276
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177118478832991
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