Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq97228 154 3e-32 seq7954 147 5e-30 seq117227 125 2e-23 seq66478 113 1e-19 seq21879 91.5 3e-13 seq97156 89.7 1e-12 seq75922 89.7 1e-12 seq17433 89.7 1e-12 seq7963 89.7 1e-12 seq66268 87.8 4e-12 seq9545 87.8 4e-12 seq117087 84.2 5e-11 seq76410 84.2 5e-11 >seq97228 Length=228612 Score = 154 bits (170), Expect = 3e-32 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||||| ||||| || || || ||||||||||| | ||||||||||| |||||| Sbjct 211786 CGAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 211727 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || |||||||| || | ||||| || ||| ||||||| Sbjct 211726 CGGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCT 211667 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||| ||||| ||| || ||| | ||||| | | ||| || || | | Sbjct 211666 TCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGC 211607 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || ||| | || || ||||| ||||| || Sbjct 211606 GTGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTG 211569 Score = 91.5 bits (100), Expect = 3e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| || |||||| |||||||||| | |||||| | || |||||| | || Sbjct 211692 CTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAACATTCAA 211751 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 || ||||| || ||||| ||||| ||||||||||| Sbjct 211752 AAGGAGTCCACCCTTCATCTTGTGTTGAGACTTCG 211786 >seq7954 Length=808569 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || || || ||||||||||| | | ||||||||| |||||| | Sbjct 793861 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTAC 793802 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||||||||||||||| || |||||||| || | ||||| || ||| |||||||| Sbjct 793801 GGCCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTT 793742 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||| ||||| ||||| ||| | ||||||| | ||| || || | || Sbjct 793741 CCTTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCG 793682 Query 199590 TGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 |||| || || || || | || ||||||||||| Sbjct 793681 TGATGGTTTTCCCTGTAAAGGTCTTCACAAAAAT 793648 >seq117227 Length=121535 Score = 125 bits (138), Expect = 2e-23 Identities = 158/216 (73%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 |||||||| ||||| || || || ||||||||||| | ||||||||||| |||||| | Sbjct 79504 AAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACA 79445 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 ||||||||||||||||| | || ||||| || | ||||| || ||| ||||||||| Sbjct 79444 GCCATCTTCCAGCTGCTTAGCAGCAAAGATCAGCCTCTGCTCATCAGGAGGAATTCCTTC 79385 Query 199531 TCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGT 199590 ||||| ||||| ||| || ||| | ||||| | | ||| || | | ||| Sbjct 79384 CTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGT 79325 Query 199591 GATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || || |||| ||||| || Sbjct 79324 GATGGTTTTCCCTGTAAG-GTCCTCACGAAAATCTG 79290 >seq66478 Length=146994 Score = 113 bits (124), Expect = 1e-19 Identities = 153/212 (72%), Gaps = 1/212 (0%) Strand=Plus/Minus Query 199415 CTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCA 199474 ||||| || |||| || || ||||| || |||| ||||||||||| | ||| | ||| Sbjct 11455 CTCAG-ACCTGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCA 11397 Query 199475 TCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGC 199534 |||||||||||||| || || |||||||| ||||||||||| || || | ||| Sbjct 11396 TCTTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTA 11337 Query 199535 TCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATC 199594 |||| ||||| ||| || || | |||||| | | || || |||| ||||| Sbjct 11336 CCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATG 11277 Query 199595 GTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || |||||||| || || Sbjct 11276 GTCTTGCCTGTCAGGGTCTTCACAAAGATCTG 11245 Score = 107 bits (118), Expect = 5e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 199420 GACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTC 199479 ||| ||||| || || ||||| || |||| ||||||||||| | ||| | ||||||| Sbjct 11223 GACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTT 11164 Query 199480 CAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTG 199539 ||||||||| || || |||||||| ||||||||||| || || | ||| ||||| Sbjct 11163 CAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCCTG 11104 Query 199540 AATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTT 199599 ||||| ||| || || | |||||| | | || || || | ||||| ||||| Sbjct 11103 GATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCNAGGGTGATGGTCTT 11044 Query 199600 ACCCGTGAGAGTTTTCACAAAAATTT 199625 || || || || |||| || |||| Sbjct 11043 GCCGGTCAGGGTCTTCATGAAGATTT 11018 >seq21879 Length=1267 Score = 91.5 bits (100), Expect = 3e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||||| || || || ||||||||||| | | || |||||| |||| | | Sbjct 686 GAAGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGGAGTCAGACAAATTAC 745 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 ||||||||| |||| || || ||||| || | ||||| || ||| |||||||| Sbjct 746 -AGAATCTTCCAGATGCTCACCAGCCAAGATCAGTCTGTGCTGATCAGGAGGAATTCCTT 804 Query 199530 CTCGCTCCTGAATCT 199544 || ||| ||| |||| Sbjct 805 CTTGCTGCTGGATCT 819 >seq97156 Length=413001 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || |||||||| ||||| || ||| | ||||| ||||| ||||||||||||| |||| | Sbjct 395488 TCAAAGTCTCAACACAAGATGAAGAATGGACTCTTTTTGAACGTTGTAGTCAGACAAA-T 395430 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||| |||||||||||||| || | ||||| | | ||| ||| | || |||||| Sbjct 395429 ATGTCCGTCTTCCAGCTGCTTACCCAC-AAGATTGGCCTCTGTTGGCCAAGAGGAATTCC 395371 Query 199528 TTCTCGCTCCTGAATCTT 199545 ||| ||||| ||||| Sbjct 395370 TTCCTCATCCTGGATCTT 395353 >seq75922 Length=371470 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/223 (69%), Gaps = 8/223 (4%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| |||||| |||| | ||| | |||||| Sbjct 193741 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 193800 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAA-----ATTCCTTCTC 199532 ||||||||||| ||||| ||||| || | ||| ||||| || | | || || || Sbjct 193801 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCT 193860 Query 199533 GCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGA 199592 ||||| ||||| ||| || || | || ||| | | || || |||| |||| Sbjct 193861 TATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTCACTGGGCTCCACTTCCAGGGTGA 193920 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 | ||||| | || || || |||| || || || |||||| Sbjct 193921 TGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTG---CATTTT 193960 >seq17433 Length=217209 Score = 89.7 bits (98), Expect = 1e-12 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||| | ||||||||||| |||||| | ||||||||||||||||| || ||||||| Sbjct 167047 CCTTTTGAATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGA 166988 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || | ||||| || ||| ||||||| Sbjct 166987 TCAGCCTTTGCTGATCAGGAGGAATTCCT 166959 >seq7963 Length=681008 Score = 89.7 bits (98), Expect = 1e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||| || || ||||| || |||| |||||| |||| | ||| | |||||| Sbjct 60898 AGGACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCT 60957 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGG 199518 || |||||||| | ||| |||||||| | |||||||||||| Sbjct 60958 TCTAGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGG 60998 >seq66268 Length=907216 Score = 87.8 bits (96), Expect = 4e-12 Identities = 133/188 (71%), Gaps = 1/188 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||||||||||||| | || ||| | ||||| ||||||||||| || || || Sbjct 480587 CCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTGCTTGCCAGCAAAT 480528 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 || || | |||||| || || | || ||||| || || ||||| ||| || Sbjct 480527 ATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTC 480468 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 || | |||||| | | || || || | ||||| ||||| ||||| || || ||||| Sbjct 480467 TCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACG 480408 Query 199619 AAAATTTG 199626 || || || Sbjct 480407 AAGATCTG 480400 >seq9545 Length=18559 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||||||||| ||||| | ||||| |||||| |||| | ||||||||||| |||||| | Sbjct 10942 AAGTCTCAGCACAAGATA-AGAGTGGACTCCCTTTGAATGTTGTAGTCAGACAAAGTACA 11000 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||| |||||||| || || | ||| | | ||||| || ||| | | || || Sbjct 11001 GCCATCTTCAAGCTGCTTACCAGC-AGGATCAACCTCTGCTCATCAGGAGGAGTCCCGTC 11059 Query 199531 TCGCTCCTGAATCTT 199545 ||||||||||| Sbjct 11060 CTTATCCTGAATCTT 11074 >seq117087 Length=234790 Score = 84.2 bits (92), Expect = 5e-11 Identities = 149/215 (69%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 199410 GAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCC 199469 ||||||||| ||| | || || || |||||| |||| ||| ||||||| |||||| | Sbjct 123128 GAAGTCTCAACACAGGATGAAGGGTAGACTCCATTTGAGTGTTATAGTCAGACAAAGTGC 123069 Query 199470 TTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTT 199529 | |||||||||||||| || || |||| || | |||| || ||| ||| | | Sbjct 123068 AAC-ATCTTCCAGCTGCTGGCCAGCAAAGAGCAGCCTTAGCTGATCAGGAGGAATGCGTC 123010 Query 199530 CTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACG 199589 | ||||||||||| ||| || ||| | ||||||| | ||| || | | | Sbjct 123009 CCTCATCCTGAATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACCTTGAGCA 122950 Query 199590 TGATCGTCTT-ACCCGTGAGAGTTTTCACAAAAAT 199623 | || ||||| |||| |||| || || | ||||| Sbjct 122949 TTATGGTCTTCACCCATGAGGGTCTTTAAGAAAAT 122915 >seq76410 Length=63831 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 199411 AAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCT 199470 ||||||||| ||||| | ||||| ||||||||||| | |||| |||||| |||||| | Sbjct 42144 AAGTCTCAGCACAAGATA-AGAGTAGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACA 42202 Query 199471 TCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 |||||||||||||||| || || | ||| | | ||||| || || | | || || Sbjct 42203 GTCATCTTCCAGCTGCTTACCAGC-AGGATCAACCTCTGCTCATCAAGAGGAGTCCCCTC 42261 Query 199531 TCGCTCCTGAATCTT 199545 ||||||||||| Sbjct 42262 CTTATCCTGAATCTT 42276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177118478832991