Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq66478 123 3e-23 seq75922 116 4e-21 seq66268 105 8e-18 >seq66478 Length=146994 Score = 123 bits (136), Expect = 3e-23 Identities = 167/233 (72%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| | ||| || ||||| |||| || ||| || ||||| |||||||| | Sbjct 11242 TGCCACCTCTCAGACGGAAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 11183 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | ||||||| | || | ||||||||||| || || || | ||||||||||| | | Sbjct 11182 AAAGAGTGCAGCCATCTTTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGG 11123 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| || ||| |||||| ||||| || | | ||||| || | |||| Sbjct 11122 GGATGTCCTCTTTATCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCCA 11063 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 | || | |||||||| ||||| ||||| || || | ||||||| ||||||| Sbjct 11062 CCTCNAGGGTGATGGTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTTTG 11010 Score = 113 bits (124), Expect = 5e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || ||||| |||||||| || ||||||| | || || ||||||||||| || || Sbjct 11433 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCTGCTTGCCAGCAAA 11374 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | || | | ||| || || |||||| ||||| | Sbjct 11373 GATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCTTGGCCTTGACATT 11314 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || | ||||| |||| |||||||| ||||| ||||| || || || Sbjct 11313 CTCAATGGTGTCACTGGGATCCACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCAC 11254 Query 46582 AAAGATTTGCAT 46593 |||||| ||||| Sbjct 11253 AAAGATCTGCAT 11242 >seq75922 Length=371470 Score = 116 bits (128), Expect = 4e-21 Identities = 172/244 (70%), Gaps = 5/244 (2%) Strand=Plus/Plus Query 46359 ATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGT 46418 |||| | ||| || || | ||| | ||||| |||| || ||| || ||||| |||| Sbjct 193718 ATTAATAGCCACCCCTCAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGT 193777 Query 46419 AGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGT 46478 | || || |||||||| | || || |||||||||||||| || |||| | ||| |||| Sbjct 193778 AATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGT 193837 Query 46479 CGG-----CCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC 46533 ||| || | || |||||| ||| |||||| ||||| || | | | ||| Sbjct 193838 CGGGGAGAGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTGACATTCTCAATGGAGTC 193897 Query 46534 GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | ||||| |||| |||||||| |||| ||||| || || | ||||| ||||| Sbjct 193898 ACTGGGCTCCACTTCCAGGGTGATGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCAT 193957 Query 46594 TTTG 46597 |||| Sbjct 193958 TTTG 193961 >seq66268 Length=907216 Score = 105 bits (116), Expect = 8e-18 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 46384 CACCAGATGCAA--TGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCG 46441 |||||||||||| || || || || |||| |||||||| || ||||||| | || Sbjct 480606 CACCAGATGCAAGATGGACCCT--TTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCC 480549 Query 46442 TCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCC 46501 || ||||||||||| || ||||||| | |||||| || | | | || |||||||| Sbjct 480548 TCCAGCTGCTTGCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCT 480489 Query 46502 ATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTT 46561 |||||| ||||| || | | ||||| || | || || || | |||||||| Sbjct 480488 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 480429 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTG 46590 ||||||||||| || || || ||||| || Sbjct 480428 TTGCCCGTCAGGGTCTTCACGAAGATCTG 480400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564394972455960