Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq66478 111 2e-19
seq75922 96.9 3e-15
seq97228 87.8 2e-12
seq14694 87.8 2e-12
>seq66478
Length=146994
Score = 111 bits (122), Expect = 2e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||| |||| ||| | || || || || ||||| ||||||||| | || || ||| ||
Sbjct 11011 AAAATGAAAATCTTCATGAAGACCCTGACCGGCAAGACCATCACCCTNGAGGTGGAGCCC 11070
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| || ||||||| || ||| | |||
Sbjct 11071 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGACATCCCCCCTGAC 11130
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| ||||| ||||| | || ||||| |||||| | || | |||| || ||||||
Sbjct 11131 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGAAAGATGGCTGCACTCTTTCTGACTAC 11190
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||| || || | || ||||| |||| | ||| ||||||| |||
Sbjct 11191 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCTTCCGTCTGAGAGGTGGC 11241
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || || || ||||| ||||||||| | || || || |||
Sbjct 11242 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTGGATCCCAGT 11301
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| | ||||||| || ||| | |||||
Sbjct 11302 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGGTAAAGAGGACATCCCCCCTGACCAG 11361
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| ||||| | || ||||| |||||||| || | |||| || |||||||||
Sbjct 11362 CAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCTGCACTCTTTCTGACTACAAC 11421
Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446
||||| || || | || |||||
Sbjct 11422 ATCCAGAAAGAGTCCACCCTGCA 11444
>seq75922
Length=371470
Score = 96.9 bits (106), Expect = 3e-15
Identities = 163/236 (69%), Gaps = 5/236 (2%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|||||||| || ||| | || || || || |||| ||||||||| | || || ||| ||
Sbjct 193960 AAAATGCAGATCTTCATGAAGACCCTGACCAGCAAGACCATCACCCTGGAAGTGGAGCCC 193901
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG----- 38355
| ||| | | | | | || | || |||| || || ||||| || |||
Sbjct 193900 AGTGACTCCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCTCTCC 193841
Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415
||||||||||| |||| || | || ||||| |||||||| || | ||||| || |
Sbjct 193840 CCGACCAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTG 193781
Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
| ||||||||||| || || | || ||||| |||| || ||| |||| || |||
Sbjct 193780 ATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 193725
>seq97228
Length=228612
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || ||||| || || || | ||| ||||||||||| |||| || || ||
Sbjct 211563 AAGATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCC 211622
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | ||| | || | || |||| || ||||| |||||||| | ||
Sbjct 211623 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 211682
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| || |||| || | ||| || || |||||||| || | || || | ||||||
Sbjct 211683 CAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 211742
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
||||| |||||||| | || || ||| | ||| ||
Sbjct 211743 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 211778
>seq14694
Length=1798513
Score = 87.8 bits (96), Expect = 2e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455
|||||||| | |||||||| || ||||||||||| |||||||| ||| || ||
Sbjct 777124 ACCTCCTCAGCCGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGG 777183
Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508
||||| |||||||| || || || ||| |||||||||| | ||| | |||||
Sbjct 777184 TATTGGATGGGAAAGATAACGAAGCGGTGGGGGTTTTCTCTCAATAAAGGCTC 777236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499426460904320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |