Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq66478 111 2e-19 seq75922 96.9 3e-15 seq97228 87.8 2e-12 seq14694 87.8 2e-12 >seq66478 Length=146994 Score = 111 bits (122), Expect = 2e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||| |||| ||| | || || || || ||||| ||||||||| | || || ||| || Sbjct 11011 AAAATGAAAATCTTCATGAAGACCCTGACCGGCAAGACCATCACCCTNGAGGTGGAGCCC 11070 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || ||||||| || ||| | ||| Sbjct 11071 AGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGATAAAGAGGACATCCCCCCTGAC 11130 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||| | || ||||| |||||| | || | |||| || |||||| Sbjct 11131 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGAAAGATGGCTGCACTCTTTCTGACTAC 11190 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || ||||| |||| | ||| ||||||| ||| Sbjct 11191 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCTTCCGTCTGAGAGGTGGC 11241 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 11242 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTGGATCCCAGT 11301 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| | ||||||| || ||| | ||||| Sbjct 11302 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGGTAAAGAGGACATCCCCCCTGACCAG 11361 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| ||||| | || ||||| |||||||| || | |||| || ||||||||| Sbjct 11362 CAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCTGCACTCTTTCTGACTACAAC 11421 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| || || | || ||||| Sbjct 11422 ATCCAGAAAGAGTCCACCCTGCA 11444 >seq75922 Length=371470 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/236 (69%), Gaps = 5/236 (2%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || ||| | || || || || |||| ||||||||| | || || ||| || Sbjct 193960 AAAATGCAGATCTTCATGAAGACCCTGACCAGCAAGACCATCACCCTGGAAGTGGAGCCC 193901 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCG----- 38355 | ||| | | | | | || | || |||| || || ||||| || ||| Sbjct 193900 AGTGACTCCATTGAGAATGTCAAGGCCAAGATCCAGGATAAGGAGGGCATCCCCCTCTCC 193841 Query 38356 CCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACG 38415 ||||||||||| |||| || | || ||||| |||||||| || | ||||| || | Sbjct 193840 CCGACCAACAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTG 193781 Query 38416 ACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 | ||||||||||| || || | || ||||| |||| || ||| |||| || ||| Sbjct 193780 ATTACAACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTGAGGGGTGGC 193725 >seq97228 Length=228612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || | ||| ||||||||||| |||| || || || Sbjct 211563 AAGATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCC 211622 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | ||| | || | || |||| || ||||| |||||||| | || Sbjct 211623 TCGGACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGAT 211682 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || |||| || | ||| || || |||||||| || | || || | |||||| Sbjct 211683 CAGCAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTAC 211742 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||| |||||||| | || || ||| | ||| || Sbjct 211743 AACATTCAAAAGGAGTCCACCCTTCATCTTGTGTTG 211778 >seq14694 Length=1798513 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 133396 ACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAA 133455 |||||||| | |||||||| || ||||||||||| |||||||| ||| || || Sbjct 777124 ACCTCCTCAGCCGTCCAAAAGGAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGG 777183 Query 133456 TATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACAGCGGCTC 133508 ||||| |||||||| || || || ||| |||||||||| | ||| | ||||| Sbjct 777184 TATTGGATGGGAAAGATAACGAAGCGGTGGGGGTTTTCTCTCAATAAAGGCTC 777236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499426460904320