Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq27438 176 2e-38
seq76224 125 3e-23
seq87143 107 8e-18
seq97228 105 3e-17
seq7954 100 1e-15
seq55092 87.8 7e-12
>seq27438
Length=395273
Score = 176 bits (194), Expect = 2e-38
Identities = 472/712 (66%), Gaps = 21/712 (3%)
Strand=Plus/Plus
Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973
||| |||| ||||||||||| ||||| | || ||||| ||||||| || |||||||
Sbjct 214075 GCAGTTGGCATTGATCTTGGCACCACTTACTCCTGTGTGGGTGTTTTTCAGCATGGAAAG 214134
Query 450974 GTAGAAATTATAGCAAATGACCAAG-GATCACGAACTACTCCTTCATGGGTAAGTTTTAC 451032
|| || || || || |||||||| | || | ||||| || || | || ||||||
Sbjct 214135 GTGGAGATAATTGCCAATGACCAGGCGAAC-CGAACCACACCAAGCTATGTTGCTTTTAC 214193
Query 451033 GGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTA--AATTCAAATGCCA 451088
|| |||| |||| | ||| | | | || |||| ||| ||| || |||
Sbjct 214194 TGACAAAGAATGACTAATTGGGGATACCTCGAAGAATCA--GGTTGCAATG--AACCCCA 214249
Query 451089 AAAACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTAC 451148
|||||||| | |||||| |||| | | ||||| ||| || ||||||| | ||| |
Sbjct 214250 CCAACACAGTTTTTGATGCCAAACATCTGATTGGATGTAGGTTTGATGATTCTGTTGTTC 214309
Query 451149 AAAAAGAGAAAAAATTCTTTTC--TTATGATGTAGTAAAT----CAAAAAGGAAAGCCCT 451202
| || | | || | ||||| || || ||| || | ||| || ||
Sbjct 214310 AGTCTGATATGTAGCACTGGCCCTTTATGGTG--GTGAATGATGCAGACAGGCCAGGCCA 214367
Query 451203 ATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTA 451262
| | |||||| | || ||||| || || |||| ||| || || || | || |||
Sbjct 214368 AGGTCCAAGTAGAGTACAAAGGAGAGACAAAAAGTTTCCACCCGGAGGAGGTGTCCTCTG 214427
Query 451263 TGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATG 451322
||||||| | || ||| | |||| |||||| ||| |||| | ||||| |||
Sbjct 214428 TGGTTCTAATAAAGATGGAGGAAATTGCAGAAGCCTATCTTGGGAAGACGGTTACCAATG 214487
Query 451323 CAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAG 451382
| || | || || | |||| |||| |||| | || |||||||||| |||||||| |
Sbjct 214488 CTGTGGTCACAGTGTCAGCTTGCTTCAGTGATTCTCAGTGGCAAGCAACAAAAGATGCTG 214547
Query 451383 GACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAG 451442
|| ||||||||| | ||||| ||| ||||||| |||||||| || || |||||| | |
Sbjct 214548 GAACTATTGCTGGCCTCAATGTGCTTTGAATTATCAATGAACCAACTGCTGCTGCTATTG 214607
Query 451443 CATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTG 451502
| ||||| ||| || || | || |||| ||| | | | ||||| || |
Sbjct 214608 CTTATGGGTTAGATAAG---AAGGTTGGAGCTGAAAGGAATGTGCTGATTTTTGACTTGG 214664
Query 451503 GTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGG 451562
| || || ||| | || || | || | ||||| ||||| | |||||||||||
Sbjct 214665 GAGGTGGTACTTTTAATGTGTCAATCCTCACTATTGAGGATGGAATTTTTGAAGTAAAAT 214724
Query 451563 CAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAATGCAATTGT 451614
|||| ||| || || || | || || ||||| ||||||| |||| ||
Sbjct 214725 CAACAGCTGGAGACACCCACTTGGGTGGAGAAGACTTTGATAACCCAATAGT 214776
Score = 107 bits (118), Expect = 8e-18
Identities = 269/402 (67%), Gaps = 10/402 (2%)
Strand=Plus/Plus
Query 451967 GGAAAACAACTATGTAAGAGCGTAAATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTT 452026
|||||| |||| ||||||| | || || ||||||||||||| |||||||| || ||
Sbjct 215117 GGAAAAGAACTGAATAAGAGCATTAACCCCAATGAAGCTGTTGCTTATGGTGCAGCTGTC 215176
Query 452027 CAAGCAGCTATTCTAACAGGTTCAGATGA---TGA-AAAATTAGGAGATATTCTGTTAGT 452082
|| ||||| |||||| | || ||| | ||| || ||| | ||| | ||| | |
Sbjct 215177 CAGGCAGCCATTCTATCTGG---AGACAAGTCTGAGAACATTCAG-GATTTGCTGCTCTT 215232
Query 452083 AGATGTAACACCTCTATCTCTTGGAGTTGAAACAGCTGGTGGAATGATGACTAATTTAAT 452142
||||| || ||||| || ||||| |||| | ||||||||| | |||||| | ||
Sbjct 215233 GGATGTCACTCCTCTCTCCCTTGGTACTGAAGCTGCTGGTGGAGTCATGACTGTCCTCAT 215292
Query 452143 TAAACGAGGAACTTCTATTCCTTGTAAAAAGAGTCAAACATTTAGTACAGCAAGTGATAA 452202
| || || | || ||| || ||| || || || | | | ||| ||
Sbjct 215293 CAGGCGCAATACCACCATCCCTACCAAGCAGACACAGACTTTCACCATATACTCTGACAA 215352
Query 452203 CCAACCAGGTGTAACTATTCAAGTGTTTGAAGGAGAACGTGCAATGACACGAGATAATAA 452262
| | || ||||| | ||||| |||| |||||| ||| | || ||||| | |||||| ||
Sbjct 215353 CTAGCCTGGTGTCTC-ATTCAGGTGTATGAAGGTGAAAGGGCCATGAC-CAAGATAACAA 215410
Query 452263 TAAACTAGGAGAATTTACTCTTTCAAACATTCCTCCTATGCCAAGGGGAACTCCTCAAAT 452322
|| ||| | ||| ||| || ||| |||| | | | || |||||| ||
Sbjct 215411 CCTGCTTGGAAAGTTTGACCTTACAGGCATACCTCTTGCACACCGTGGTGTTCCTCAGAT 215470
Query 452323 TGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGT 452364
|||| | || | ||| |||||||||| || || || |||||
Sbjct 215471 TGAAGTCACTTTTGACATTGATGCAAAAGGCATCCTCAATGT 215512
>seq76224
Length=91619
Score = 125 bits (138), Expect = 3e-23
Identities = 277/414 (67%), Gaps = 4/414 (1%)
Strand=Plus/Minus
Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251
||| | |||| | | |||||| | || ||||| || || |||| ||| || || ||
Sbjct 6281 AGGCAGGCCCAAGGTCCAAGTAGAGTAAAAAGGAGAGAC-AAAAGTTTCTANCCAGAGGA 6223
Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311
| || ||||||||||| | || ||||| |||| |||||| ||| ||||
Sbjct 6222 GGTGTCTTCTATGGTTCTGATGAAGATGAAGGAAATTGCAGAAGCCTATCTTGGGAAGAT 6163
Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371
||||| |||| || | || || || ||||| |||||| | | || || || |||||
Sbjct 6162 GGTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATAAGTCTCAGCGACAGGCAAC 6103
Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431
|||| ||| ||| ||||||| | ||||| ||||||||||| |||||||| || ||
Sbjct 6102 AAAAGTTGCTGGAACTATTGCTAACCTCAATGTGCTTCGAATTATCAATGAACCAACTGC 6043
Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491
|||||| | || |||| ||| || || | || |||| ||| | | |
Sbjct 6042 TGCTGCTATTGCTTATGTGTTAGATAA---GAAGGTTGGAGCTGAAAGGAATGTACTGAT 5986
Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551
||||| | || || || ||| |||| || | || | ||||| ||||| | ||
Sbjct 5985 TTTTGACTAGGGAGGTGGTACTTTTGATGTGTCAATCCTCACTATTGAGGATGGAATTTT 5926
Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605
|||||| || |||| ||| || || ||| | || || ||||| |||| ||
Sbjct 5925 TGAAGTCAAATCAACTGCTGGAGACACCCATTTGGGTGGAGAAGACTTTGACAA 5872
>seq87143
Length=1077445
Score = 107 bits (118), Expect = 8e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
||||| |||| || | || || || ||||| ||||||||| | || || || |||||
Sbjct 611613 GTTACCAATGCTGTGGTCACAGTGCCAGCTTACTTCAATGATTCTCAGCGACAGGCAACA 611672
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432
|||||||| ||| ||||||||| | ||||| ||||||||||| ||||| || || ||
Sbjct 611673 AAAGATGCTGGAACTATTGCTGGCCTCAATGTGCTTCGAATTATCAATGAGCCAACTGCT 611732
Query 451433 GCTGCTCTAGCATATGG 451449
|||||| | || |||||
Sbjct 611733 GCTGCTATTGCTTATGG 611749
>seq97228
Length=228612
Score = 105 bits (116), Expect = 3e-17
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | |||||||| || || || | || ||||| || || || || |||||| | ||
Sbjct 211566 ATGCAGATTTTCGTGAAGACCCTTATGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 211625
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || ||| | | || || || || ||||| ||||||||||||||||||||
Sbjct 211626 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAG 211685
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || ||| | || || || || |||||||| | |||||| | || || ||
Sbjct 211686 CAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 211745
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| | || || |||||
Sbjct 211746 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 211783
>seq7954
Length=808569
Score = 100 bits (110), Expect = 1e-15
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||| || || || | || || ||||| || || || || |||||| | ||
Sbjct 793642 ATGGAGATTTTTGTGAAGACCTTTACAGGGAAAACCATCACGCTCGAGGTTGAACCCTCA 793701
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | || ||| | | || || || || ||||||||||||||||||||||||||
Sbjct 793702 GACACTATAGAAAATTTGAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 793761
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
||| | | || ||| | || || || || |||||||| | |||||| | || || |
Sbjct 793762 CAAAGGCTGATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAGC 793821
Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267
||| | ||||| | || ||||| | || || |||||
Sbjct 793822 ATTCAAAAGGAGTCCACCCTTCATCTTGTGTTGAGACT 793859
>seq55092
Length=657151
Score = 87.8 bits (96), Expect = 7e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372
||||| ||||||| ||||||| || ||||| ||||||||||| || |||||||||||
Sbjct 237020 GTTACCCATGCAGTTGTTACTGTACCAGCTTACTTCAATGATGCCCAGCGGCAAGCAACC 237079
Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425
|||||||| || |||||||| | ||||| | | || || ||||| ||
Sbjct 237080 AAAGATGCTGGCACCATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 237132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1972696604770284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |