Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq27438 205 7e-47 seq76224 122 7e-22 seq87143 104 2e-16 seq22415 95.1 9e-14 >seq27438 Length=395273 Score = 205 bits (226), Expect = 7e-47 Identities = 789/1230 (64%), Gaps = 42/1230 (3%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | ||||| || | ||| |||||| || |||||||||||||| | || | Sbjct 215283 GTCATGACTCCACCAGCAGCTTCAGTACCAAGGGAGAGAGGAGTGACATCCAAGAGCAGC 215224 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615 | || |||| || ||| | | ||| ||||| ||||| || | ||| |||||| Sbjct 215223 AAATCCTGAATGTTCTCAGACTTGTCTCCAGATAGAATGGCTGCCTGGACAGCTGCACCA 215164 Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675 || ||||||||||||| || |||| | | ||| |||| ||| |||||||| || | | Sbjct 215163 TAAGCAACAGCTTCATTGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGAAGAAGTCT 215104 Query 517676 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 ||||| | ||| | ||| | || | | || || || || | | Sbjct 215103 TGCAGAAGCT-TCTGAATCTTGAGGATTCTGGTAGAACCACCCACCA------------G 215057 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 | |||||| || || ||||| ||| | | | ||||| || | || ||| | Sbjct 215056 GATCTGTGACTTGTCTAGTTTGACATCTCAAAGGGCCTTTTCCACATGGTCCAGAGTGCC 214997 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-- 517852 || |||| ||| | | | |||||| ||| ||| || |||| || | |||| Sbjct 214996 TCGGAACAGGTCAGCATTTAATTCTTCAAATCGAGCACTGGTAA---TGGAAGTATAGAA 214940 Query 517853 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG--T 517909 || ||||| || ||| |||||||| ||||| | | || || ||| || || | Sbjct 214939 GTCGATTCCCTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTAGAGGAGAGGGT 214880 Query 517910 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTG 517965 |||| ||||| |||||||| || | | || | | ||| | | || | || Sbjct 214879 GCAC--TTAGCCCGTTCACAGGCAGCACGCAGATGCCTGACAGCTCTCTTGTTCTCACTG 214822 Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGA 518023 || ||| || | |||| || || || ||| | ||| | || | | Sbjct 214821 ATG----TCTTCCTTGTGCTTTCGATTAAACTCAGCAATGAA--ATGGTTGACTATTGGG 214768 Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 |||||||| ||||| || ||||| | || | ||| | || | | |||||| |||| | Sbjct 214767 TTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTTACTTCAAAAATT 214708 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||||| |||| || | | | |||| | || ||||| |||| |||||||| || Sbjct 214707 CCATCCTCAATAGTGAGGATTGACACATTAAAAGTACCACCTCCCAAGTCAAAAATCAGC 214648 Query 518144 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 |||||| |||| | || ||||| | ||||| |||| |||||||||||||||| Sbjct 214647 ACATTCCTTTCAGCTCCAACCTTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGT 214588 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| ||||||| | ||||| || |||||||| |||| |||||||| || ||||| Sbjct 214587 TCATTGATAATTCAAAGCACATTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCTTGC 214528 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCA 518323 | || ||||| | || | || | || || | || |||| || || || ||| Sbjct 214527 CACTGAGAATCACTGAAGCAAGCTGACACTGTGACCACAGCATTGGTAACCGTCTTCCCA 214468 Query 518324 ATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG 518383 | ||| || ||| ||| | ||| || ||| || || || || | | || ||| Sbjct 214467 AGATAGGCTTCTGCAATTTCCTCCATCTTTATTAGAACCACAGAGGACACCTCCTCCGGG 214408 Query 518384 -GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAAT----ATGGTTTATTACCAA 518438 | | | | ||| | |||| || ||||| | | ||| | | || Sbjct 214407 TGGAAACTTTTTGTCTCTCCTTTG-TACTCTACTTGGACCTTGGCCTGGCCTGTCTGCAT 214349 Query 518439 CATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 518498 |||| | || |||| ||||||| | |||||| || |||||| |||| ||| Sbjct 214348 CATTCACCACCATAAAGGGCCAGTGCTACATATCAGACTGAACAACAGAATCATCAAACC 214289 Query 518499 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGAT 518558 | ||||| | |||| |||||||||| || ||||| || || |||||| | |||| Sbjct 214288 TACATCCAATCAGATGTTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGAT 214229 Query 518559 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 518618 || | | ||| ||||| || |||| | || ||||| | |||||| ||| || | Sbjct 214228 TCTTCGAGGTATCCCCAATTAGTCATTCTTTGTCAGTAAAAGCAACATAGCTTGGTGTGG 214169 Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678 | || || | || ||||| ||||| || || || || |||| || | ||||| |||| Sbjct 214168 TTCGGTTCGCCTGGTCATTGGCAATTATCTCCACCTTTCCATGCTGAAAAACACCCACAC 214109 Query 518679 AACTAAAAGTTGTTCCTAAATCAATACCAA 518708 | |||| || || | |||||| |||| Sbjct 214108 AGGAGTAAGTGGTGCCAAGATCAATGCCAA 214079 >seq76224 Length=91619 Score = 122 bits (134), Expect = 7e-22 Identities = 235/347 (68%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083 || ||||| ||||| || ||||| | || | ||| | || | | | |||| |||| | Sbjct 5872 TTGTCAAAGTCTTCTCCACCCAAATGGGTGTCTCCAGCAGTTGATTTGACTTCAAAAATT 5931 Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143 ||||| |||| || | | | |||||| || ||||| ||| |||||||| ||| Sbjct 5932 CCATCCTCAATAGTGAGGATTGACACATCAAAAGTACCACCTCCCTAGTCAAAAATCAGT 5991 Query 518144 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203 |||||| |||| | || ||||| | |||| |||| |||||||||||||||| Sbjct 5992 ACATTCCTTTCAGCTCCAACCTTCTTATCTAACACATAAGCAATAGCAGCAGCAGTTGGT 6051 Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263 ||||| ||||||| | ||||| || |||||| |||| ||| |||| || || ||| Sbjct 6052 TCATTGATAATTCGAAGCACATTGAGGTTAGCAATAGTTCCAGCAACTTTTGTTGCCTGT 6111 Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCA 518323 | || || | || || || || || || || | || |||| || || || ||| Sbjct 6112 CGCTGAGACTTATTGAAGTAAGCTGGCACTGTGACCACAGCATTGGTAACCATCTTCCCA 6171 Query 518324 ATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGA 518370 | ||| || ||| ||| ||||| || | | || ||| || || Sbjct 6172 AGATAGGCTTCTGCAATTTCCTTCATCTTCATCAGAACCATAGAAGA 6218 >seq87143 Length=1077445 Score = 104 bits (114), Expect = 2e-16 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || ||||| | ||||| |||| ||||||||||||||| ||||| ||||||| | ||| Sbjct 611761 TTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCGAAGCACA 611702 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || || |||||||| |||| |||||||| || || |||| || ||||| || || || Sbjct 611701 TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAATCATTGAAGTAA 611642 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 || || || || | || |||| Sbjct 611641 GCTGGCACTGTGACCACAGCAT 611620 >seq22415 Length=1348 Score = 95.1 bits (104), Expect = 9e-14 Identities = 97/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052 ||| ||||| || |||| ||||| ||||| ||||||||| | || || | ||||| Sbjct 916 TGTTGTAGCTACTGTAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 975 Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112 ||||||||| ||||| ||| | || ||| ||||| || || || |||||||| || || Sbjct 976 TCATTATGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAGATCGGTAGAGCTGGCCG 1035 Query 367113 TGATGGA 367119 ||||||| Sbjct 1036 TGATGGA 1042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3774898718525338