Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq27438 205 7e-47
seq76224 122 7e-22
seq87143 104 2e-16
seq22415 95.1 9e-14
>seq27438
Length=395273
Score = 205 bits (226), Expect = 7e-47
Identities = 789/1230 (64%), Gaps = 42/1230 (3%)
Strand=Plus/Minus
Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555
||||| | ||||| || | ||| |||||| || |||||||||||||| | || |
Sbjct 215283 GTCATGACTCCACCAGCAGCTTCAGTACCAAGGGAGAGAGGAGTGACATCCAAGAGCAGC 215224
Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCA 517615
| || |||| || ||| | | ||| ||||| ||||| || | ||| ||||||
Sbjct 215223 AAATCCTGAATGTTCTCAGACTTGTCTCCAGATAGAATGGCTGCCTGGACAGCTGCACCA 215164
Query 517616 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 517675
|| ||||||||||||| || |||| | | ||| |||| ||| |||||||| || | |
Sbjct 215163 TAAGCAACAGCTTCATTGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGAAGAAGTCT 215104
Query 517676 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734
||||| | ||| | ||| | || | | || || || || | |
Sbjct 215103 TGCAGAAGCT-TCTGAATCTTGAGGATTCTGGTAGAACCACCCACCA------------G 215057
Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794
| |||||| || || ||||| ||| | | | ||||| || | || ||| |
Sbjct 215056 GATCTGTGACTTGTCTAGTTTGACATCTCAAAGGGCCTTTTCCACATGGTCCAGAGTGCC 214997
Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-- 517852
|| |||| ||| | | | |||||| ||| ||| || |||| || | ||||
Sbjct 214996 TCGGAACAGGTCAGCATTTAATTCTTCAAATCGAGCACTGGTAA---TGGAAGTATAGAA 214940
Query 517853 -TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAG--T 517909
|| ||||| || ||| |||||||| ||||| | | || || ||| || || |
Sbjct 214939 GTCGATTCCCTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTAGAGGAGAGGGT 214880
Query 517910 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT----TGCTGATTG 517965
|||| ||||| |||||||| || | | || | | ||| | | || | ||
Sbjct 214879 GCAC--TTAGCCCGTTCACAGGCAGCACGCAGATGCCTGACAGCTCTCTTGTTCTCACTG 214822
Query 517966 ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT--ACAAGACGA 518023
|| ||| || | |||| || || || ||| | ||| | || | |
Sbjct 214821 ATG----TCTTCCTTGTGCTTTCGATTAAACTCAGCAATGAA--ATGGTTGACTATTGGG 214768
Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083
|||||||| ||||| || ||||| | || | ||| | || | | |||||| |||| |
Sbjct 214767 TTATCAAAGTCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTTACTTCAAAAATT 214708
Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143
||||| |||| || | | | |||| | || ||||| |||| |||||||| ||
Sbjct 214707 CCATCCTCAATAGTGAGGATTGACACATTAAAAGTACCACCTCCCAAGTCAAAAATCAGC 214648
Query 518144 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203
|||||| |||| | || ||||| | ||||| |||| ||||||||||||||||
Sbjct 214647 ACATTCCTTTCAGCTCCAACCTTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGT 214588
Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263
||||| ||||||| | ||||| || |||||||| |||| |||||||| || |||||
Sbjct 214587 TCATTGATAATTCAAAGCACATTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCTTGC 214528
Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCA 518323
| || ||||| | || | || | || || | || |||| || || || |||
Sbjct 214527 CACTGAGAATCACTGAAGCAAGCTGACACTGTGACCACAGCATTGGTAACCGTCTTCCCA 214468
Query 518324 ATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGG 518383
| ||| || ||| ||| | ||| || ||| || || || || | | || |||
Sbjct 214467 AGATAGGCTTCTGCAATTTCCTCCATCTTTATTAGAACCACAGAGGACACCTCCTCCGGG 214408
Query 518384 -GAATATTGCTTGGATTCATTTTGATATGATACTTCAAAAT----ATGGTTTATTACCAA 518438
| | | | ||| | |||| || ||||| | | ||| | | ||
Sbjct 214407 TGGAAACTTTTTGTCTCTCCTTTG-TACTCTACTTGGACCTTGGCCTGGCCTGTCTGCAT 214349
Query 518439 CATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAAT 518498
|||| | || |||| ||||||| | |||||| || |||||| |||| |||
Sbjct 214348 CATTCACCACCATAAAGGGCCAGTGCTACATATCAGACTGAACAACAGAATCATCAAACC 214289
Query 518499 CTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGAT 518558
| ||||| | |||| |||||||||| || ||||| || || |||||| | ||||
Sbjct 214288 TACATCCAATCAGATGTTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGAT 214229
Query 518559 ATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTG 518618
|| | | ||| ||||| || |||| | || ||||| | |||||| ||| || |
Sbjct 214228 TCTTCGAGGTATCCCCAATTAGTCATTCTTTGTCAGTAAAAGCAACATAGCTTGGTGTGG 214169
Query 518619 TGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 518678
| || || | || ||||| ||||| || || || || |||| || | ||||| ||||
Sbjct 214168 TTCGGTTCGCCTGGTCATTGGCAATTATCTCCACCTTTCCATGCTGAAAAACACCCACAC 214109
Query 518679 AACTAAAAGTTGTTCCTAAATCAATACCAA 518708
| |||| || || | |||||| ||||
Sbjct 214108 AGGAGTAAGTGGTGCCAAGATCAATGCCAA 214079
>seq76224
Length=91619
Score = 122 bits (134), Expect = 7e-22
Identities = 235/347 (68%), Gaps = 0/347 (0%)
Strand=Plus/Plus
Query 518024 TTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT 518083
|| ||||| ||||| || ||||| | || | ||| | || | | | |||| |||| |
Sbjct 5872 TTGTCAAAGTCTTCTCCACCCAAATGGGTGTCTCCAGCAGTTGATTTGACTTCAAAAATT 5931
Query 518084 CCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGT 518143
||||| |||| || | | | |||||| || ||||| ||| |||||||| |||
Sbjct 5932 CCATCCTCAATAGTGAGGATTGACACATCAAAAGTACCACCTCCCTAGTCAAAAATCAGT 5991
Query 518144 ACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGT 518203
|||||| |||| | || ||||| | |||| |||| ||||||||||||||||
Sbjct 5992 ACATTCCTTTCAGCTCCAACCTTCTTATCTAACACATAAGCAATAGCAGCAGCAGTTGGT 6051
Query 518204 TCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGT 518263
||||| ||||||| | ||||| || |||||| |||| ||| |||| || || |||
Sbjct 6052 TCATTGATAATTCGAAGCACATTGAGGTTAGCAATAGTTCCAGCAACTTTTGTTGCCTGT 6111
Query 518264 CTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCA 518323
| || || | || || || || || || || | || |||| || || || |||
Sbjct 6112 CGCTGAGACTTATTGAAGTAAGCTGGCACTGTGACCACAGCATTGGTAACCATCTTCCCA 6171
Query 518324 ATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGA 518370
| ||| || ||| ||| ||||| || | | || ||| || ||
Sbjct 6172 AGATAGGCTTCTGCAATTTCCTTCATCTTCATCAGAACCATAGAAGA 6218
>seq87143
Length=1077445
Score = 104 bits (114), Expect = 2e-16
Identities = 108/142 (76%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| ||||| | ||||| |||| ||||||||||||||| ||||| ||||||| | |||
Sbjct 611761 TTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCGAAGCACA 611702
Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284
|| || |||||||| |||| |||||||| || || |||| || ||||| || || ||
Sbjct 611701 TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAATCATTGAAGTAA 611642
Query 518285 GCAGGAACAGTAATAACGGCAT 518306
|| || || || | || ||||
Sbjct 611641 GCTGGCACTGTGACCACAGCAT 611620
>seq22415
Length=1348
Score = 95.1 bits (104), Expect = 9e-14
Identities = 97/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 366993 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 367052
||| ||||| || |||| ||||| ||||| ||||||||| | || || | |||||
Sbjct 916 TGTTGTAGCTACTGTAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTTAT 975
Query 367053 TCATTATGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 367112
||||||||| ||||| ||| | || ||| ||||| || || || |||||||| || ||
Sbjct 976 TCATTATGGTGCTCCTAAGGAAATGGAATCCTATTACCAGGAGATCGGTAGAGCTGGCCG 1035
Query 367113 TGATGGA 367119
|||||||
Sbjct 1036 TGATGGA 1042
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3774898718525338
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |