Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq66310 336 3e-87 seq27438 291 1e-73 seq107916 273 3e-68 seq76224 188 9e-43 seq104799 113 6e-20 seq87143 107 2e-18 >seq66310 Length=469565 Score = 336 bits (372), Expect = 3e-87 Identities = 848/1272 (67%), Gaps = 38/1272 (3%) Strand=Plus/Plus Query 6896 GGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCA 6955 || ||||| || || ||| || | |||||||| | ||| || ||||||| ||| Sbjct 42904 GGGATCGTGGTGTTCCTCTTGATGAGTGGGGTCATGACACCGCCAGCTGTTTCGATGCCA 42963 Query 6956 AGAGACAGAGGTGTCACGTCCAAGAGTAA---CAGGTCTTGAACAGATTCGTTCC--CTT 7010 || |||| || |||||||| |||||| ||| || || ||| ||| ||| ||| Sbjct 42964 AGTGACAATGGAGTCACGTC---GAGTAAGAGCAGATCCTGCACA--TTC--TCCGACTT 43016 Query 7011 CAC-CCGTTAAG-ATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTT 7068 | ||| |||| || || || || || | || || || || |||||||| |||||||| Sbjct 43017 GTCGCCGATAAGGATAGCCGCCTGCACAGCGGCGCCATAGGCCACCGCCTCGTCGGGGTT 43076 Query 7069 AATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGG 7128 || | || ||||| || || ||||| || ||||| | || | || || ||||| Sbjct 43077 GATGCTCTTGTTCAGCTCCTTGCCGTTGAAGAAATCCTGCAGCAGCTTCTGGATCTTCGG 43136 Query 7129 GATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGA 7188 ||| || || || || || |||| || || || | | | || || | ||| | Sbjct 43137 GATGCGGGTGGAGCCGCCCACCAGCACTATCTCCTGGATCTGGCCCTTGTCCAGCTTGGC 43196 Query 7189 GTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACATTTACGGAACAAGTCCATACACAG 7245 || || || | ||||| || || |||| | | | ||||| | ||| || Sbjct 43197 ATCGCGCAGAGCCTTTTCCACCGGCTCCAGGGTCCCT---CGGAAGAGGTCGGCGTTGAG 43253 Query 7246 TTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATC 7305 ||||| || || || ||||| ||||| || |||||||| ||||| ||||| | ||| || Sbjct 43254 CTCCTCGAAGCGGGCGCGGGTGATGGACGTGTAGAAATCCACGCCCTCGTAGAGCGAGTC 43313 Query 7306 AATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGT 7365 || || ||| | | || | | ||| | || ||||| |||||||| || || || Sbjct 43314 GATCTCGATGCTGGCCTGCGTGGACGAGCTCAGGGTGCGCTTGGCGCGCTCGCAGGCGGT 43373 Query 7366 TCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAA 7425 || | || || | || ||| ||| ||| || ||||| ||||| || || || Sbjct 43374 GCGCAGTCGGCGCACAGCGCGCTTGTTGGGCCCAATGTCCTTCTTGTGTTTGCGCTTGAA 43433 Query 7426 CTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATC 7485 ||| || | | ||| | | | | ||||| ||||| ||||||| ||| || || Sbjct 43434 CTCCTCCGCCAGGTGGCTGACCATACGGTTGTCGAAGTCTTCGCCACCCAGGTGGGTGTC 43493 Query 7486 CCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAA 7545 || || || | || || || ||||| || | || ||| | | | || || || || Sbjct 43494 GCCGGCCGTGGACTTCACCTCGAAGATGCCGTCCTCGATGGTCAGGATGGACACGTCGAA 43553 Query 7546 CGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG------TTCTT 7599 || ||||| ||||||||||| ||||| |||||| | ||| || | | ||||| Sbjct 43554 GGTGCCACCGCCCAGGTCAAAGATGAGCACGTTCTTCTCGCCGCCGGCGCAGCCCTTCTT 43613 Query 7600 ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCA 7658 ||| || ||||| ||||| ||||||||||| || || || || || || || ||| || | Sbjct 43614 ATCCAGGCCGTAGGCGATGGCCGCCGCCGTGGGCTCGTTGATGATGCGCAGCACA-TTGA 43672 Query 7659 GGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCG 7718 |||| | || || |||| ||||| || || || || ||||| ||||| || ||||| | Sbjct 43673 GGCCCGTGATGGTGCCCGCGTCTTTGGTGGCCTGGCGCTGCGAGTCGTTGAAATAGGCGG 43732 Query 7719 GGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCA 7778 ||||||| | ||||||| | || || || || || | ||| ||||| ||||||| Sbjct 43733 GGACCGTGATGACCGCGCTCTGCACCTTGCCCCCCAGGTAGGCTTCGGCGATCTCTTTCA 43792 Query 7779 TTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGT-TTCGTTTCACCGTTA 7837 | || || || ||||| || |||||||| || | | | | || ||| | || || ||| Sbjct 43793 TCTTCGTGAGGACCATGGAGGAAATCTCCTC-GGGGAAGAAGGTCTTCATCTCCCCTTTA 43851 Query 7838 AAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCT 7897 | || || | | |||| || | || | || | || | ||| ||| | Sbjct 43852 TACTCCACCTGCACTTTGGGCTT---CCCACCCTCGCTCACCACTCTGAACGGCCAGTGC 43908 Query 7898 TTCATATCGTCTTGGACCTGTTG-GTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATC 7956 ||||| || || ||| || | |||| ||||| | ||||| || | ||| || || Sbjct 43909 TTCATGTCCGACTGCACC-GTGGCGTCCTCGAACTTCCGCCCGATCAGCCTCTTGGCGTC 43967 Query 7957 AAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACG 8016 || | ||||| ||||||||||||| ||||||||| || ||||| ||||| || || Sbjct 43968 GAAGATGGTGTTCGTGGGGTTCATGGCCACTTGGTTCTTGGCGGCGTCGCCGATGAGGCG 44027 Query 8017 TTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGC 8076 ||| | || || || || ||||| ||||| || || || || |||||||| || Sbjct 44028 TTC---GGTGTCGGTGAAGGCCACGTAGCTGGGGGTGGTGCGGTTGCCCTGGTCGTTGGC 44084 Query 8077 AATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATC 8136 || || || || | | | ||| |||| || ||||| || || || || || | || Sbjct 44085 GATGATCTCCACCTTGCCATGTTGGAAGACCCCCACGCAGGAGTAGGTGGTGCCCAGGTC 44144 Query 8137 AATACCGATTGC 8148 || ||||| || Sbjct 44145 GATGCCGATAGC 44156 >seq27438 Length=395273 Score = 291 bits (322), Expect = 1e-73 Identities = 993/1530 (65%), Gaps = 28/1530 (2%) Strand=Plus/Minus Query 6565 CTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTT 6624 ||| ||||||||| |||| ||||| || || || |||| ||| ||||| || || || Sbjct 215642 CTTCTCATCTTCAACTTTGTACTTCTCGGCTTCCTGGATCATGCGCTCAATATCCTCCTT 215583 Query 6625 CGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATC 6684 || ||||| ||||| || || || ||||| | || || | | || ||| Sbjct 215582 GCTCAAGTGGCCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTGCCTGTGCTCTGATC 215523 Query 6685 TTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGG 6744 | ||||| ||||| | || || |||||||||| || || | || | ||| || || Sbjct 215522 TACAGCAGAAACATTGAGGATGCCTTTTGCATCAATGTCAAAAGTGACTTCAATCTGAGG 215463 Query 6745 TGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATC 6804 ||| | |||| || || || || | ||||| | ||||| | ||||||| Sbjct 215462 AACACCACGGTGTGCAAGAGGTATGCCTGTAAGGTCAAACTTTCCAAGCAGGTTGTTATC 215403 Query 6805 CGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTG 6864 | | | | | |||||||||||| || | ||| | || |||| | || || Sbjct 215402 T-TGGTCATGGCCCTTTCACCTTCATACACCTGAAT-GAGACACCAGGCTAGTTGTCAGA 215345 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 | | ||| | ||| | ||| | || || || ||||| | | || | Sbjct 215344 GTATATGGTGAAAGTCTGTGTCTGCTTGGTAGGGATGGTGGTATTGCGCCTGATGAGGAC 215285 Query 6925 GGTCATAATACCACCCATAGTTTCGAGT-CCAAGAGACAGAGGTGTCACGTCCAAGAGTA 6983 ||||| | ||||| || ||| ||| ||||| || ||||| || || |||||||| | Sbjct 215284 AGTCATGACTCCACCAGCAGCTTC-AGTACCAAGGGAGAGAGGAGTGACATCCAAGAGCA 215226 Query 6984 ACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCC 7043 || || |||| || | || || | || ||||| || ||||| | || | Sbjct 215225 GCAAATCCTGAATGTTCTCAGACTTGTCTCCAGATAGAATGGCTGCCTGGACAGCTGCAC 215166 Query 7044 CGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAAT 7103 | || || || || |||| ||||||||| | |||||||||||||| || || || | | Sbjct 215165 CATAAGCAACAGCTTCATTGGGGTTAATGCTCTTATTCAGTTCTTTTCCATTGAAGAAGT 215106 Query 7104 CCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCAT 7163 | | | | ||||| || |||||| || || ||||| |||| ||| Sbjct 215105 CTTGCAGAAGCTTCTGAATCTTGAGGATTCTGGTAGAACCACCCACCAG---GAT----- 215054 Query 7164 TCACTTTCGATTTATCGATCTTTGAG-TCTCGAAGTGTTTTTTCGACAGGTTCCATACAT 7222 || | || || || | ||||| |||| ||| | ||||| ||| | |||| | Sbjct 215053 ---CTGT-GACTTGTCTAG-TTTGACATCTCAAAGGGCCTTTTCCACATGGTCCAGAGTG 214999 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 ||||||| ||| | | ||| ||||| || |||| ||||||||| |||||||| Sbjct 214998 CCTCGGAACAGGTCAGCATTTAATTCTTCAAATCGAGCACTGGTAATGGAAGTATAGAAG 214939 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTT 7342 || | || || || | |||||||| ||||| | | || | | || || | || Sbjct 214938 TCGATTCCCTCATACAGAGAATCAATCTCAATACTGGCCTGGGTGCTAGAGGAGAGGGTG 214879 Query 7343 CGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATA 7402 | ||| || || ||||| || | || | | | | | || | | ||| | || Sbjct 214878 CACTTAGCCCGTTCACAGGCAGCACGCAGATGCCTGACAGCTCTCTTGTTCTCACTGATG 214819 Query 7403 TCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAA 7462 |||| ||| || || || |||||||| || ||| || | | | ||| || Sbjct 214818 TCTTCCTTGTGCTTTCGATTAAACTCAGCAATGAAATGGTTGACTATTGGGTTATCAAAG 214759 Query 7463 TCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCA 7522 ||||| ||||||||||| || || || || || | ||| |||||||| || || | ||| Sbjct 214758 TCTTCTCCACCCAAGTGGGTGTCTCCAGCTGTTGATTTTACTTCAAAAATTCCATCCTCA 214699 Query 7523 ATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTA 7582 || | | | || |||| ||| |||||||| |||| ||||||||| || || ||| | Sbjct 214698 ATAGTGAGGATTGACACATTAAAAGTACCACCTCCCAAGTCAAAAATCAGCACATTCCTT 214639 Query 7583 TCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATA 7642 || | | |||||||| | || || || ||||| || || ||||||||||| ||| Sbjct 214638 TCAGCTCCAACCTTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATA 214579 Query 7643 ATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 || | ||| ||| || ||||||||||||||| | |||||||| || ||||| | || || Sbjct 214578 ATTCAAAGCACA-TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCTTGCCACTGAGA 214520 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||| | ||| | || | || || || || || | || || |||| || ||||| | Sbjct 214519 ATCACTGAAGCAAGCTGACACTGTGACCACAGCATTGGTAACCGTCTTCCCAAGATAGGC 214460 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCT-CTTCAGCCGCAAACT 7820 ||| || || || | ||| || | ||||||| || || | || || | | | ||||| Sbjct 214459 TTCTGCAATTTCCTCCATCTTTATTAGAACCACAGAGGACACCTCCTCCGGGTGGAAACT 214400 Query 7821 GTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCG-CAGCACCGGGGATA 7879 ||| || || || || | || |||| | | ||| | | | | ||| | | Sbjct 214399 -TTTTGTCTCTCCTTTGTACTCTACTTGGACCTTGGCCTGGCCTGTCTGCATCATTCACC 214341 Query 7880 ACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCG 7939 ||| || | | ||| | | |||||| || || || |||| | | ||| Sbjct 214340 ACCATAAAGGGCCAGTGCTACATATCAGACTGAACAACAGAATCATCAAACCTACATCCA 214281 Query 7940 ATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCC 7999 || ||| | || ||||||||||||||||| |||||||||| || || ||||||| Sbjct 214280 ATCAGATGTTTGGCATCAAAAACTGTGTTGGTGGGGTTCATTGCAACCTGATTCTTCGAG 214221 Query 8000 GCGTCCCCGATAAGACGTTCATTATTT-TCCGTAAACGCGACGTACGATGGGGTCGTTCG 8058 | ||||| || || ||||| ||| || ||||| || || || ||| || ||||| Sbjct 214220 GTATCCCCAATTAG----TCATTCTTTGTCAGTAAAAGCAACATAGCTTGGTGTGGTTCG 214165 Query 8059 ATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 ||| | ||||| || ||||| || || || Sbjct 214164 GTTCGCCTGGTCATTGGCAATTATCTCCAC 214135 >seq107916 Length=669868 Score = 273 bits (302), Expect = 3e-68 Identities = 805/1233 (65%), Gaps = 26/1233 (2%) Strand=Plus/Minus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || ||| || || | ||| ||||||| || | |||||||| | | | Sbjct 358866 GTCATCACGCCGCCCGCCGTCTCCAATCCTAGAGACAAGGGAGCTACGTCCAACAAAAGC 358807 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | ||||| || ||| | || ||| |||| || || || || |||| ||||||| Sbjct 358806 AAATCTTGTACTTTTTCAGACTTGTCCCCCATTAAAATAGCCGCCTGCACCGCCGCCCCG 358747 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || |||||||||||||| || || | || || || || || |||||||| ||| Sbjct 358746 TAGGCCACCGCCTCATCGGGATTGATGCTCTTGTTGAGATCCCGTCCATTAAAATAGTCC 358687 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | || | || | || ||||| || || || || || |||| ||| || || | Sbjct 358686 TGCAGCAGCTTCTGCACCTTGGGGATGCGCGTGGAGCCGCCCACCAGAACAATGTCGTGG 358627 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA---TACAT 7222 | ||| | || || ||||| | ||| || || | || || || || |||| | | | Sbjct 358626 ATTTTAGCCTTGTCCATCTTGGCGTCGCGCAGGGCCTTCTCCACGGGCTCCAGCGTGCCT 358567 Query 7223 TTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAA 7282 | ||| | ||| ||||| || ||||| ||||| | ||| ||||| || ||||| Sbjct 358566 ---CTGAATAGGTCTGCACACAACTCTTCAAACCGTGCTCTGGTGATGGACGTGTAGAAG 358510 Query 7283 TCAACGCCGTCGTATAACGAATCAATTTCAATGGTTG---TTTGTGCCGTCGAAGATAAC 7339 || | ||| ||| | | || || || || | ||||| | |||| | || || | Sbjct 358509 TCGATGCCCTCGAACAGAGAGTCGATCTCCA-GGTTGGCCTGGGTGC--TGGACGACAGG 358453 Query 7340 GTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAA 7399 || | ||| || ||||| || ||||| || | || || | || ||| ||| | Sbjct 358452 GTCCTCTTGGCACGCTCGCAGGCCGTGCGCAGGCGCCGCACCGCGCGCTTGTTCTGGCTG 358393 Query 7400 ATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCG 7459 || || ||||| || || | || ||||| || |||||| | | || | ||| Sbjct 358392 ATGTCCTTCTTGTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCGGTTGTCG 358333 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || || |||| ||| || || ||||| || || || || || ||||| || | Sbjct 358332 AAGTCCTCCCCGCCCAGGTGCGTGTCGCCCGCCGTGGCCTTCACCTCGAAGATGCCGTCG 358273 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT- 7578 || || | | | || || || ||||| || || |||||||| || ||||| ||||| Sbjct 358272 TCGATCGTCAGGATGGACACGTCGAACGTGCCGCCCCCCAGGTCGAAGATGAGCACGTTG 358213 Query 7579 CGTATCGTCGTCTTTG---TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || || | ||| | || || ||||| ||||| || |||||||| || || Sbjct 358212 CG----CTCCCCCTTGCCCGACCGGTCCAGGCCGTAGGCGATGGCGGCCGCCGTGGGCTC 358157 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || || | || ||| || || || || | |||||||| || || || || Sbjct 358156 GTTGATGATTCTTAGCACGTTGAGTCCCGCGATGACACCTGCATCTTTGGTGGCCTGGCG 358097 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 |||||| ||||| || ||||| || ||||| | ||||||| ||||| | | || | Sbjct 358096 TTGCGAGTCGTTGAAATAGGCGGGCACCGTGATCACCGCGTTGGTGACACTGTGGCCCAA 358037 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGC 7815 | | | || || | || ||||| ||||| || ||||| || || ||||| || | Sbjct 358036 AAAAGCCTCTGCAGTCTCCTTCATCTTGGTCAGCACCATGGACGAGATCTCCTCGGGGTA 357977 Query 7816 AAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGG 7875 || |||| | || || || | || | | |||| || || | || Sbjct 357976 GAAGGCTTTCTTCTCGCCTTTGTAGGACACCAGCACCTTGGGCTTGCCC---CCTTCGTT 357920 Query 7876 GATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCT 7935 || ||| | | | | |||| ||||| || || ||| |||| |||||| || Sbjct 357919 GACAACTTGAAATGGCCAAAGCTTCATGTCCGACTGCACCACAGGGTCGTTAAACTTCCT 357860 Query 7936 TCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTT 7995 || || || || || ||||| ||||| ||||| | ||||||||||| |||||||| Sbjct 357859 GCCAATTAGTCGTTTGGCATCGAAAACGGTGTTCTGCGGGTTCATGGCCACCTGGTTCTT 357800 Query 7996 CGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGT 8055 |||||||| ||||| ||||| || | || || || || ||||| |||||||| Sbjct 357799 GGCCGCGTCTCCGATCAGACGCTC---GGTGTCGGTGAAGGCCACGTAGCTGGGGGTCGT 357743 Query 8056 TCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCA 8115 || || || |||||||| || || || || || | ||| || | ||||| ||||| Sbjct 357742 GCGGTTGCCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAACACGCCCACGCA 357683 Query 8116 CGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 ||| || || || || | || || || || || Sbjct 357682 CGAGTAGGTGGTGCCCAGGTCGATGCCTATGGC 357650 Score = 260 bits (288), Expect = 2e-64 Identities = 796/1227 (65%), Gaps = 14/1227 (1%) Strand=Plus/Plus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||| | || ||| || || || || || ||||| || | |||||||| || | | Sbjct 352003 GTCATCACGCCGCCCGCCGTCTCCAGACCCAGCGACAGCGGCGCCACGTCCAGCAGCAGC 352062 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 ||||| || || || | || ||| | | |||||| || || |||| ||||||| Sbjct 352063 AGGTCCTGCACGTTCTCAGACTTGTCCCCCATCAGGATGGCCGCCTGCACCGCCGCCCCG 352122 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || || |||||||| || ||||| || | || ||||| || ||||| || | ||| Sbjct 352123 TAGGCCACCGCCTCGTCCGGGTTGATGCTCTTGTTCAGGTCGCGCCCGTTGAAGAAGTCC 352182 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | || | || | || ||||| || || || || || |||| || | || | Sbjct 352183 TGCAGCAGCTTCTGCACCTTGGGGATGCGCGTGGAGCCGCCCACCAGCACCAGGTCGTGG 352242 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 | | || || || | ||| | ||| || || | || || || || |||| Sbjct 352243 ATCTGCGCCTTGTCCAGCTTGGCGTCGCGCAGGGCCTTCTCCACGGGCTCCAGCGTGCCG 352302 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||||| |||| ||||| ||||| || || || || || ||||| || ||||| || Sbjct 352303 CGGAACAGGTCCGAGCACAGCTCCTCGAACCGCGCCCGCGTGATGGACGTGTAGAAGTCG 352362 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 | ||| ||| | | || || || || | | | | || | | || || | || | | Sbjct 352363 ATGCCCTCGAACAGAGAGTCGATCTCCAGGCTGGCCTGNGTGCTGGACGACAGGGTCCTC 352422 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || || ||||| || ||||| || | || || | || ||| ||| | || || Sbjct 352423 TTGGCACGCTCGCAGGCCGTGCGCAGGCGCCGCACCGCGCGCTTGTTCTGGCTGATGTCC 352482 Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 ||||| || || | || ||||| || |||||| | | || | ||||| || Sbjct 352483 TTCTTGTGCTTCCTCTTGAACTCCTCCACGAAGTGGCTCACCAGCCGGTTGTCGAAGTCC 352542 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 || || |||| ||| || || ||||| || || || || || ||||| || | || || Sbjct 352543 TCCCCGCCCAGGTGCGTGTCGCCCGCCGTGGCCTTCACCTCGAAGATGCCGTCGTCGATC 352602 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585 | | | || || || ||||| || || |||||||| || ||||| ||||| || Sbjct 352603 GTCAGGATGGACACGTCGAACGTGCCGCCCCCCAGGTCGAAGATGAGCACGTTG----CG 352658 Query 7586 -TCGTCTTTGTTCTTA---TCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAAT 7641 || | ||| | || || ||||| ||||| || |||||||| || || || || Sbjct 352659 CTCCCCCTTGCCCGACCGGTCCAGGCCGTAGGCGATGGCGGCCGCCGTGGGCTCGTTGAT 352718 Query 7642 AATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGA 7701 || | || ||| || || || || | |||||||| || || || |||||||| Sbjct 352719 GATTCTTAGCACGTTGAGTCCCGCGATGACACCTGCATCTTTGGTGGCCTGGCGTTGCGA 352778 Query 7702 ATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGA 7761 ||||| || ||||| || ||||| | ||||||| ||||| | | || | | | | Sbjct 352779 GTCGTTGAAATAGGCGGGCACCGTGATCACCGCGTTGGTGACACTGTGGCCCAAAAAAGC 352838 Query 7762 TTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTG 7821 || || | || ||||| ||||| || ||||| || || ||||| || | || Sbjct 352839 CTCTGCAGTCTCCTTCATCTTGGTCAGCACCATGGACGAGATCTCCTCGGGGTAGAAGGC 352898 Query 7822 TTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAAC 7881 |||| | || || || | || | | |||| || || | | | || ||| Sbjct 352899 TTTCTTCTCGCCTTTGTAGGACACCAGCACCTTGGGCTTGCCCCCTTC---GTTGACAAC 352955 Query 7882 CTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGAT 7941 | | | | |||| ||||| || || ||| |||| |||||| || || || Sbjct 352956 TTGAAATGGCCAAAGCTTCATGTCCGACTGCACCACAGGGTCGTTAAACTTCCTGCCAAT 353015 Query 7942 AAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGC 8001 || || || ||||| ||||| ||||| | ||||||||||| |||||||| ||||| Sbjct 353016 TAGTCGTTTGGCATCGAAAACGGTGTTCTGCGGGTTCATGGCCACCTGGTTCTTGGCCGC 353075 Query 8002 GTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATT 8061 ||| ||||| ||||| || | || || || || ||||| |||||||| || || Sbjct 353076 GTCTCCGATCAGACGCTC---GGTGTCGGTGAAGGCCACGTAGCTGGGGGTCGTGCGGTT 353132 Query 8062 CCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATA 8121 || |||||||| || || || || || | ||| || | ||||| |||||||| || Sbjct 353133 GCCCTGGTCGTTGGCGATGATCTCCACCTTGCCGTGCTGGAACACGCCCACGCACGAGTA 353192 Query 8122 CGTTGTTCCTAAATCAATACCGATTGC 8148 || || || | || || ||||| || Sbjct 353193 GGTGGTGCCCAGGTCGATGCCGATCGC 353219 >seq76224 Length=91619 Score = 188 bits (208), Expect = 9e-43 Identities = 425/629 (68%), Gaps = 23/629 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||| |||||||| || || || || || || | |||||||||||| || || Sbjct 5875 TCAAAGTCTTCTCCACCCAAATGGGTGTCTCCAGCAGTTGATTTGACTTCAAAAATTCCA 5934 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | ||||| | | | || |||||||| |||||||| ||| ||||||||| ||||| Sbjct 5935 TCCTCAATAGTGAGGATTGACACATCAAAAGTACCACCTCCCTAGTCAAAAATCAGTACA 5994 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 ||| | || | | |||||||| | | || || ||||| || || ||||||||| Sbjct 5995 TTCCTTTCAGCTCCAACCTTCTTATCTAACACATAAGCAATAGCAGCAGCAGTTGGTTCA 6054 Query 7637 TTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || ||||| ||||| ||| || ||| |||||||||| | ||| |||| || || ||||| Sbjct 6055 TTGATAATTCGAAGCACA-TTGAGGTTAGCAATAGTTCCAGCAACTTTTGTTGCCTGTCG 6113 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || || | || ||||| || || || || || || || | || || |||| || || Sbjct 6114 CTGAGACTTATTGAAGTAAGCTGGCACTGTGACCACAGCATTGGTAACCATCTTCCCAAG 6173 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC-AGCCG 7814 ||| | ||| || || || ||||| || | |||||||| || || | ||| || | Sbjct 6174 ATAGGCTTCTGCAATTTCCTTCATCTTCATCAGAACCATAGAAGACACCTCCTCTGGNTA 6233 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 |||| ||| || || || || | || |||| | | |||| | | ||| || Sbjct 6234 GAAAC--TTTTGTCTCTCCTTTTTACTCTACTTGGACCTTGGGCCTGCCTGCATCA---T 6288 Query 7875 GGATAACCTTATACGACCAATCT-----TTCATATC-GTCTTGGACCTG-TTGGTCCGAA 7927 | ||| | || ||||| || |||||||| | || | | | | ||| Sbjct 6289 TCACCACCATTCACCACCAAGCTAGTGCTTCATATCAGACTGAAAACAGCATCATCC--- 6345 Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||| | | |||||| ||| | || |||||||||| |||| |||||||||| || Sbjct 6346 AACGTACGTCCGATCAGATGTTTGACATCAAAAAC--TGTTGATGGGGTTCATTGCAACC 6403 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGAT 8047 || ||||| || | ||||| || | |||| | || ||||| || || || | Sbjct 6404 TGATTCTTGGCANCATCCCCAATTAATTGTTC---CGTGTCAGTAAAAGCAACATAGCTT 6460 Query 8048 GGGGTCGTTCGATTCCCTTGGTCGTTCGC 8076 || || |||| ||||| ||||| || || Sbjct 6461 GGTGTGGTTCAGTTCCCCTGGTCATTGGC 6489 >seq104799 Length=2130 Score = 113 bits (124), Expect = 6e-20 Identities = 391/605 (65%), Gaps = 4/605 (1%) Strand=Plus/Plus Query 6496 TTCGACCGTTCCTTTCAT-TTGATAACAGTAGTTTTCGAGACCATTCTTCGCCTCGACCT 6554 ||| || ||| ||||||| |||| | || ||| || || |||||| | |||| Sbjct 1485 TTCAACTGTTGCTTTCATGTTGAAAGCA-TAGGACTCCAGTGAATTCTTGGAGGAAACCT 1543 Query 6555 T-TTTCGCGTACTTTTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCA 6613 | |||| | | ||| ||||||||| |||| ||||| || || || || ||||| ||| Sbjct 1544 TGTTTCTC-TGCTTCTCATCTTCAGCTTTGTACTTCTCGGCTTCCTGAACCATGAGCTCA 1602 Query 6614 ATGTCTTCTTTCGATAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCC 6673 || || || || || | ||||| ||||| || || || ||||| | ||| || Sbjct 1603 ATATCCTCCTTGCTCAAGCGGCCCTTGTCATTGGTGATGGTGATCTTGTTCTCTTTGCCT 1662 Query 6674 GAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACA 6733 | | ||||| | ||||| ||||| | || ||||| ||||||| || || | || Sbjct 1663 GTGCTCTTATTTACAGCAGAAACATTGAGGATGCCATTGGCATCAATGTCAAAAGTGACT 1722 Query 6734 TTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGT 6793 | ||| || || ||| ||||| | || || || || | |||| | ||||| Sbjct 1723 TCAATCTGAGGAACACCATGGGGTGCTGGAGGTATGCCTGTAAGTACAAAGTTTCCAAGC 1782 Query 6794 AAACTGTTATCCGTCGCCTTCTTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGT 6853 | |||||||| | | | | | |||||||||||| || | ||| ||| |||| Sbjct 1783 AGGTTGTTATCCTTAGTCATGGCCCTTTCACCTTCATACACCTGAATNAGCACACCAGGC 1842 Query 6854 TGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTC 6913 || || || || | ||| | ||| | ||| | || || || ||||| | | Sbjct 1843 TGGTTGTCAGAATAGGTGGTGAACGTCTGTGTCTGCTTGGTAGGGATGGTGGTATTGCGC 1902 Query 6914 GGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACG 6973 || | ||||| | ||||| || ||| | ||||| || ||||| || || Sbjct 1903 TTGATGAGGATAGTCATGACTCCACCAGCAGCTTCAATACCAAGGGAGAGAGGAGTGACA 1962 Query 6974 TCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGG 7033 | |||||| | || || |||||| || | || | | | ||||| || ||| Sbjct 1963 TTCAAGAGCAGCAAATCCTGAACATTCTCAGACTTGTCTGCAGACAGTATGGCTGCCTGG 2022 Query 7034 ACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCG 7093 || | || || || || || || ||||| |||||||| | || ||||||||||| || Sbjct 2023 ACAGCTGCACCATAAGCAACAGCTTCATCAGGGTTAATGCTCTTCTTCAGTTCTTTTCCA 2082 Query 7094 TTAAA 7098 || || Sbjct 2083 TTGAA 2087 >seq87143 Length=1077445 Score = 107 bits (118), Expect = 2e-18 Identities = 110/141 (78%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACA 7653 |||||||| | || || || ||||| || || ||||| ||||| ||||| ||||| ||| Sbjct 611761 TTCTTATCTAACCCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATAATTCGAAGCACA 611702 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 || ||||||||||||||| | |||||||| || || ||||| || ||||| || ||||| Sbjct 611701 -TTGAGGCCAGCAATAGTTCCAGCATCTTTTGTTGCCTGTCGCTGAGAATCATTGAAGTA 611643 Query 7714 GGCCGGGACCGTTACGACCGC 7734 || || || || || || || Sbjct 611642 AGCTGGCACTGTGACCACAGC 611622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634185078653320