Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq117061 96.9 4e-15 seq117011 95.1 1e-14 seq89558 93.3 5e-14 seq78627 93.3 5e-14 seq30847 93.3 5e-14 >seq117061 Length=280271 Score = 96.9 bits (106), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 21758 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 21699 Query 136777 GGGAACAGCTT 136787 || |||||| Sbjct 21698 CGGGCCAGCTT 21688 >seq117011 Length=451335 Score = 95.1 bits (104), Expect = 1e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 386775 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGTA 386834 Query 136777 GGGAACAGCT 136786 || ||||| Sbjct 386835 CGGGCCAGCT 386844 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 185077 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 185019 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 202365 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 202307 >seq89558 Length=3221207 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 2076685 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 2076627 >seq78627 Length=1950313 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 516899 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 516957 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 542661 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 542603 >seq30847 Length=1120 Score = 93.3 bits (102), Expect = 5e-14 Identities = 56/59 (95%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 ||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||| Sbjct 1058 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGGGTTCGATCCCCGT 1000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588097152099400