Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_015049.1
Length=124335
Score E
Sequences producing significant alignments: (Bits) Value
seq47095 141 7e-29
seq44410 114 1e-20
seq107916 107 2e-18
seq55571 105 5e-18
seq98388 102 6e-17
seq66378 102 6e-17
seq107976 100 2e-16
seq117652 98.7 8e-16
seq66563 89.7 4e-13
seq34968 87.8 1e-12
seq8085 87.8 1e-12
seq76498 84.2 2e-11
seq18173 84.2 2e-11
>seq47095
Length=1017
Score = 141 bits (156), Expect = 7e-29
Identities = 200/281 (71%), Gaps = 0/281 (0%)
Strand=Plus/Plus
Query 674 TACCTGTTTGCGGCAGGGTTTCATTTCCCAGCCTCAGATATGTTTGTAACCATTGCACGC 733
|||||| ||| ||||||| | || |||| | ||| |||| | | || ||||| || |
Sbjct 350 TACCTGAGTGCAGCAGGGTCGCCTTCCCCAACTTCAAATATTTCTTTAGCCATTCTACAC 409
Query 734 AACTGCCCATAATATATGACCCCTGATGGATGGCTTCATCTGTCGCTTCTAATTTCCTTT 793
|| ||||| | || | ||| |||| ||| || |||| | | ||||| || | |
Sbjct 410 AAGTGCCCTGCAGGTACATTCTCTGGTGGAGGGCCTCCTCTGCCTCCTCTAACTTGCGCT 469
Query 794 TAGAAATTTGAGAGGACATGTCTCTAGCGGTCCAGGTCCTGAGATCTTCATTCAAAGAAA 853
|||| || || |||| || ||| | || ||||||| | || || || |||| || |
Sbjct 470 TAGAGATCTGTGAGGCCAAGTCGTTTGCAGTCCAGGAGCGCAGGTCCTCGTTCAGGGAGA 529
Query 854 TGTAGTCCCTGCCATCATAGGCCTGTTGACAGTAGCCTCGAAGGAGGGTTCCATCCGGCC 913
|||| ||| |||||||||||||| |||||||| || || || ||||| || || ||||
Sbjct 530 TGTAATCCTGGCCATCATAGGCCTCCTGACAGTACCCGCGGAGCAGGGTGCCTTCTGGCC 589
Query 914 CCACAACACAGCCGGACATCCATTGGAGGGTATGTGGTTCT 954
||| | ||||| ||||||| || || || || ||||||
Sbjct 590 CCAGGTCGCAGCCATACATCCACTGCAGCGTGTGAGGTTCT 630
>seq44410
Length=656585
Score = 114 bits (126), Expect = 1e-20
Identities = 194/281 (69%), Gaps = 0/281 (0%)
Strand=Plus/Minus
Query 674 TACCTGTTTGCGGCAGGGTTTCATTTCCCAGCCTCAGATATGTTTGTAACCATTGCACGC 733
|||||| || | ||||| | || |||| | || ||| | |||| ||| | | ||
Sbjct 115051 TACCTGAGCGCAGGAGGGTCGCCTTCCCCAACTCCAAGTATTTCTGTAGCCACTCTATGC 114992
Query 734 AACTGCCCATAATATATGACCCCTGATGGATGGCTTCATCTGTCGCTTCTAATTTCCTTT 793
|| |||| | || | || ||| ||| ||| || |||| | ||| | || | |
Sbjct 114991 AAGCGCCCTGCAGGTAAGTCCTCTGGTGGTAGGCCTCTTCTGCATCCTCTGACTTGCGCT 114932
Query 794 TAGAAATTTGAGAGGACATGTCTCTAGCGGTCCAGGTCCTGAGATCTTCATTCAAAGAAA 853
|||| || || |||| || ||| | |||||||||| | || || || |||| | ||
Sbjct 114931 TAGAGATCTGTGAGGCCAAGTCGTTTGCGGTCCAGGAGCGCAGGTCCTCGTTCAGGGCAA 114872
Query 854 TGTAGTCCCTGCCATCATAGGCCTGTTGACAGTAGCCTCGAAGGAGGGTTCCATCCGGCC 913
|||| ||| |||||||||||||| |||||||| || || || ||| || || ||||
Sbjct 114871 TGTAATCCTGGCCATCATAGGCCTCCTGACAGTACCCGCGGAGCAGGCGGCCCTCTGGCC 114812
Query 914 CCACAACACAGCCGGACATCCATTGGAGGGTATGTGGTTCT 954
||| | ||||| ||||||| || || || |||||||||
Sbjct 114811 CCAGGTCGCAGCCATACATCCACTGCAGCGTGTGTGGTTCT 114771
Score = 102 bits (112), Expect = 6e-17
Identities = 139/189 (74%), Gaps = 4/189 (2%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| ||||| | ||||| || | | | ||
Sbjct 12032 CCTCATGGTGCACATGGCATGTGTATTTCTGCTCCTCTCCAGCAGGCACCACCAGAGATG 11973
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| |||||| || ||| | | ||
Sbjct 11972 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 11913
Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CCAGT 526
|| ||| || || ||||| | ||||| || | || || || ||||| |||||| ||||
Sbjct 11912 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGAGATCTCAGCAGGGTAGAAGTCCAG- 11855
Query 527 GGCCCAACA 535
|||||| ||
Sbjct 11854 GGCCCAGCA 11846
Score = 98.7 bits (108), Expect = 8e-16
Identities = 136/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| ||||| | | ||| || | | | ||
Sbjct 115816 CCTCATGGTGCACATGGCATGTGTATTTCTGCTCCTCCCCAGAAGGCACCACCAGAGATG 115757
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| |||||| || ||| | | ||
Sbjct 115756 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 115697
Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527
|| ||| || || ||||| | ||||| || | || || || ||||| |||||||| |
Sbjct 115696 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCANGGAGATCTCAGCAGGGTAGAAGCCCAGG 115638
Query 528 GCCCAACA 535
||||| ||
Sbjct 115637 GCCCAGCA 115630
Score = 95.1 bits (104), Expect = 1e-14
Identities = 133/187 (71%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| ||||| | |||||| ||| | ||
Sbjct 80698 CCTCATGGTACACATGGCATGTGTATTTCTGCTCCACCCCAGAAGGTACCACTAGAGATG 80639
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| |||| | || ||| | | ||
Sbjct 80638 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCATCAGCTCCATGTCTTGAG 80579
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528
|| ||| ||| | || | | ||| || | ||| || || ||||| |||||||| ||
Sbjct 80578 TCTGTTCCTCCTCATCCTTCTTCCAGGTCAGGGTGATATCAGCAGGGTAGAAGCCCAGGG 80519
Query 529 CCCAACA 535
|||| ||
Sbjct 80518 CCCAGCA 80512
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| ||||| || ||| || | | ||||
Sbjct 95684 CCTCATGCTCCACATGGCATGTGTATTTCTGCTCCTTCCCAAAAGGCACCACCACAGCTG 95625
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || | ||| || |||||| || ||| | | | ||
Sbjct 95624 CCCACTTCTGGAAGGTTCCATCCCCTGTAACTCTTGTCTCCACCAGCTCCATCTCCTGAG 95565
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528
|| ||| ||| | || | ||||| || | ||| ||| |||| |||||| || ||
Sbjct 95564 TCTGTTCCTCCTCATCCCTCTGCCAGGTCAGGGTGATGAGGGCAGAATAGAACCCCAGGG 95505
Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGT 560
|||| || | ||||| || | || ||||||
Sbjct 95504 CCCAGCACCTGAGTGTGACATCACCTTCAGGT 95473
Score = 89.7 bits (98), Expect = 4e-13
Identities = 139/199 (70%), Gaps = 0/199 (0%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||||| ||||| || |||||| | ||||| | | ||| || | | ||||
Sbjct 139049 CCTCATGTTGCACATGGCATGTATATCTCTGCTCCTCCCCGGAAGGCACCACCACAGCTG 138990
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| | ||||||||||| | |||||||| ||||| | ||| | | |
Sbjct 138989 CCCACTTCTGGGAGGTTCCATCTCCTGAAGGTCTGGTCTCCACAAGTTCCATGTCCTGAA 138930
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528
|||| | ||| | ||| ||||| || | || || || ||||| |||||||| ||
Sbjct 138929 TCAGGTCCTCCCCAGCCAACTGCCAGGTCAGGGAGATCTCAGCAGGGTAGAAGCCCAAGG 138870
Query 529 CCCAACATTTTAGTGTTAC 547
|||| || || || || ||
Sbjct 138869 CCCAGCACTTCAGAGTGAC 138851
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/212 (69%), Gaps = 4/212 (2%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || ||||| ||||| || | |||||| | | | ||
Sbjct 28688 CCTCATGGTACACATGGCA----TATTTCTGCTCCTTCCCAGAAGGTACCACCAGAGATG 28633
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| || | || | | | ||
Sbjct 28632 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCTGCAAGCTCTGTGTCTTGAG 28573
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528
|| ||| ||| | || | | ||| || | ||| ||||| ||||| ||||||||| ||
Sbjct 28572 TCTGTTCCTCCTCATCCCTCTTCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCAAGGG 28513
Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAGGT 560
|||| || | || || || | || ||||||
Sbjct 28512 CCCAGCACCTCAGGGTGACATTACTTTCAGGT 28481
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| ||||| | ||| || | | ||||
Sbjct 2627 CCTCATGCTGCACATGGCATGTGTATTTGTGCTCCTCTCCAAAAGGCACCACCACAGCTG 2568
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| ||| ||||||| || | |||||||| |||||| | ||| | | |
Sbjct 2567 CCCACTTCTGGAAATTTCCATCCCCTGTAGGTCTGGTCTCCACCAGTTCCATGTCCTGTG 2508
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528
|| ||| ||| | || | | ||| || | || ||||| ||||| ||||| || ||
Sbjct 2507 TCTGTTCCTCCTCATCCCTCTTCCAAGTCAGAGTGATGTCAGCAGGGTAGAATCCCAGGG 2448
Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558
|||| || | ||||| || | || ||||
Sbjct 2447 CCCAGCACCTGAGTGTGACATCACCTTCAG 2418
Score = 82.4 bits (90), Expect = 6e-11
Identities = 116/163 (71%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 792 TTTAGAAATTTGAGAGGACATGTCTCTAGCGGTCCAGGTCCTGAGATCTTCATTCAAAGA 851
|||||| || || |||| || ||| | |||||||||| | || || || | || ||
Sbjct 63952 TTTAGACATCTGTGAGGCCAAGTCGTTTGCGGTCCAGGAGCGCAGGTCCTCGTCCAGGGA 63893
Query 852 AATGTAGTCCCTGCCATCATAGGCCTGTTGACAGTAGCCTCGAAGGAGGGTTCCATCCGG 911
||||| |||| || ||||||||||| |||||||| || || | || ||||| ||
Sbjct 63892 GATGTAATCCCGGCTATCATAGGCCTCCTGACAGTACCCGCGGACCAGTTGCCCATCTGG 63833
Query 912 CCCCACAACACAGCCGGACATCCATTGGAGGGTATGTGGTTCT 954
||||| | || || ||||||| || || || || | ||||
Sbjct 63832 CCCCAGGTCGCAACCATACATCCACTGCAGCGTGTGAGTTTCT 63790
>seq107916
Length=669868
Score = 107 bits (118), Expect = 2e-18
Identities = 138/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | |||||||| || ||||| ||||| | | ||| || | | | ||
Sbjct 639370 CCTCATGGTGCACATGACATGTGTATTTCTGCTCCTCCCCAGAAGGCACCACCAGAGATG 639311
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| |||||| || ||| | | ||
Sbjct 639310 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACCAGCTCCATATCCTGAG 639251
Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527
|| ||| || || ||||| | ||||| |||| ||| ||| ||||| |||||||| |
Sbjct 639250 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTTAGGGTGATGAGGGCAGGGTAGAAGCCCAGG 639192
Query 528 GCCCAACA 535
||||| ||
Sbjct 639191 GCCCAGCA 639184
>seq55571
Length=69732
Score = 105 bits (116), Expect = 5e-18
Identities = 170/242 (70%), Gaps = 2/242 (1%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | |||||||| || ||||| ||||| | | ||| || | | | ||
Sbjct 62077 CCTCATGGTGCACATGACATGTGTATTTCTGCTCCTCCCCAGAAGGCACCACCAGAGATG 62018
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| |||| | || ||| | | ||
Sbjct 62017 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCATCAGCTCCATGTCCTGAG 61958
Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527
|| ||| || || ||||| | ||||| || | ||| ||| ||||| |||||||| |
Sbjct 61957 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGTGATGAGGGCAGGGTAGAAGCCCAGG 61899
Query 528 GCCCAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGT 587
||||| ||| || || |||| | ||||| | || |||||||| || ||| |
Sbjct 61898 GCCCAGCATCGAAGGGTGACTTTCCCTTCAGGGCCAGGATGACTGGTCACATGTGCCTTT 61839
Query 588 GG 589
||
Sbjct 61838 GG 61837
Score = 95.1 bits (104), Expect = 1e-14
Identities = 135/188 (72%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || || || ||||| | | || || | | | ||
Sbjct 27498 CCTCATGGTGCACATGGCATGTGTAATTCTGCTCCTCCCCAGAAGAAACCACCAGAGATG 27439
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || || ||||| |||||| || ||| | | ||
Sbjct 27438 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGNCTGGTCTCCACCAGCTCCATGTCCTGAG 27379
Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527
|| ||| || || ||||| | ||||| || | ||| ||||| ||||| |||||||| |
Sbjct 27378 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAAGCCCAGG 27320
Query 528 GCCCAACA 535
||||| ||
Sbjct 27319 GCCCAGCA 27312
>seq98388
Length=25574
Score = 102 bits (112), Expect = 6e-17
Identities = 137/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Plus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| ||||| | ||||| || | | | ||
Sbjct 16936 CCTCATGGTGCACATGGCATGTGTATTTCTGCTCCTCCCCAGCAGGCACCACCAGAGATG 16995
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| |||||| || ||| | | ||
Sbjct 16996 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 17055
Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527
|| ||| || || ||||| | ||||| || | || ||| |||||| |||||||| |
Sbjct 17056 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGAGATGAGCGCAGGGTAGAAGCCCAGG 17114
Query 528 GCCCAACA 535
||||| ||
Sbjct 17115 GCCCAGCA 17122
>seq66378
Length=252399
Score = 102 bits (112), Expect = 6e-17
Identities = 139/189 (74%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| ||||| | ||||| || | | | ||
Sbjct 65286 CCTCATGGTGCACATGGCATGTGTATTTCTGCTCCTCTCCAGCAGGCACCACCAGAGATG 65345
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| |||||| || ||| | | ||
Sbjct 65346 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 65405
Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CCAGT 526
|| ||| || || ||||| | ||||| || | || || || ||||| |||||| ||||
Sbjct 65406 TCTGTTCCTCCTCCTCCC-TCTGCCAGGTCAGGGAGATCTCAGCAGGGTAGAAGTCCAG- 65463
Query 527 GGCCCAACA 535
|||||| ||
Sbjct 65464 GGCCCAGCA 65472
>seq107976
Length=334363
Score = 100 bits (110), Expect = 2e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 351 TCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTGCC 410
||||||| |||||||| |||||| | ||||| | | ||||||| | | ||||||
Sbjct 35877 TCATGTTGCACATGACATGTATATCTCTGCTCCTCTCCAGAAGGTACTACCACAGCTGCC 35818
Query 411 CACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAGTC 470
|||||||| || ||||||||||| || || ||||| | |||| || ||| | | ||||
Sbjct 35817 CACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTTCACCAGCTCCATGTCCTGAGTC 35758
Query 471 AGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGGCC 530
| | || | || | ||||| || | ||| || || ||||| ||||| || ||||
Sbjct 35757 TGGTCTTCCCCATCCCTCTGCCAGGTCAGGGTGATATCAGCAGGGTAGAATCCGAGGGCC 35698
Query 531 CAACA 535
|| ||
Sbjct 35697 CAGCA 35693
Score = 100 bits (110), Expect = 2e-16
Identities = 133/185 (72%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 351 TCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTGCC 410
||||||| |||||||| |||||| | ||||| | | ||||||| | | ||||||
Sbjct 62752 TCATGTTGCACATGACATGTATATCTCTGCTCCTCTCCAGAAGGTACTACCACAGCTGCC 62693
Query 411 CACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAGTC 470
|||||||| || ||||||||||| || || ||||| |||||| || ||| | | |||
Sbjct 62692 CACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTCCACCAGCTCCATGTCCTGGGTC 62633
Query 471 AGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGGCC 530
| || | || | ||||| || | ||| ||||| ||||| ||||| || ||||
Sbjct 62632 TTATCTTCCCCATCCCTCTGCCAGGTCAGGGTGATGTCAGCAGGGTAGAATCCCAGGGCC 62573
Query 531 CAACA 535
|| ||
Sbjct 62572 CAGCA 62568
Score = 91.5 bits (100), Expect = 1e-13
Identities = 125/175 (71%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| |||||||| || ||| | | ||| | | ||| || | | ||||
Sbjct 102134 CCTCATGGACCACATGACATGTGTATCTCTCCTCCTCCCCAGAAGGCACCACCACAGCTG 102075
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| ||||||||||| || || |||||||| |||||| || ||| | | |
Sbjct 102074 CCCACTTCTGGAAAGTTCCATCCCCTGCAGGTCTGGTCTCCACCAGCTCCATGTCCTGAT 102015
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCC 523
|||| | ||| | | | ||||| || | ||| || |||| ||||||||||||
Sbjct 102014 TCAGGTCCTCCCCATCTCTCTGCCAGGTCAAGGTGATCTCCGAAGGATAGAAGCC 101960
Score = 87.8 bits (96), Expect = 1e-12
Identities = 127/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 360 ACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTGCCCACTTCTGA 419
||||| || || ||| | ||||||| || ||| || | | ||||||||||||||
Sbjct 20799 ACATGGCATGTGTATCTCTGCTCTTCTCCTGAAGGCACCACCACAGCTGCCCACTTCTGG 20740
Query 420 AAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAGTCAGTTGCTCT 479
|| |||||||| || || |||||||| || | | ||| | | ||||| | |||
Sbjct 20739 AAGGTTCCATCCCCTGCAGGTCTGGTCTCAATAAGATCCATGTCCTGGGTCAGGTCCTCC 20680
Query 480 GCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CCAGTGGCCCAACA 535
| | | ||||| || | ||| |||||||||||||||||| |||| |||||| ||
Sbjct 20679 TCATNCCTCTGCCAGGTCAGGGTGATGTCCGCAGGATAGAAGNCCAG-GGCCCAGCA 20624
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 351 TCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTGCC 410
||||||| |||||||| | |||| | ||||| | | ||| || | | ||||||
Sbjct 78833 TCATGTTGCACATGACATGNATATCTCTGCTCCTCTCCAGAAGGCACCACCACTGCTGCC 78892
Query 411 CACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAGTC 470
|| ||||| || ||||||||||| || || ||||| |||||| || ||| | | ||||
Sbjct 78893 CATTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTCCACCAGCTCCATGTCCTGAGTC 78952
Query 471 AGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGGCC 530
| | || | || | ||||| || | || || || ||||| ||||| | ||||
Sbjct 78953 TGGTCTTCCCCATCCCTCTGCCAGGTCAGGGAGATCTCAGCAGGGTAGAATCTGAGGGCC 79012
Query 531 CAACATTTTAGTGTTACTTGACGGTCAGGT 560
|| || ||| || || | || ||||||
Sbjct 79013 CAGCACCTTAAGGTGACATCACCCTCAGGT 79042
>seq117652
Length=51985
Score = 98.7 bits (108), Expect = 8e-16
Identities = 134/187 (72%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| |||||||| || ||| | ||||||| || ||| || | | ||||
Sbjct 38547 CCTCATGCAGCACATGACATGTGTATCTCTGCTCTTCTCCTGAAGGCACCACCACAGCTG 38606
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| || | | ||| | | |
Sbjct 38607 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCAATAAGATCCATGTCCTGGG 38666
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528
|||| | ||| | || | ||||| || | ||| |||||||||||||||||||| ||
Sbjct 38667 TCAGGTCCTCCTCATCCCTCTGCCAGGTCAGGGTGATGTCCGCAGGATAGAAGCCCAGGG 38726
Query 529 CCCAACA 535
|||| ||
Sbjct 38727 CCCAGCA 38733
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 347 TGCCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGC 406
||| ||||| |||||||| || ||| | ||||| | | |||||| | | ||
Sbjct 47975 TGCTTCATGCAGCACATGACATGTGTATCTCTGCTCCTCTCCAGAAGGTACCACCAGAGC 48034
Query 407 TGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATC 466
|||||||||||| || |||||||| || || || ||||| || || | ||| | |
Sbjct 48035 TGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCAACAAGGTCCATGTCCTG 48094
Query 467 AGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGT 526
||||| | |||| | ||| ||||| ||| ||| ||||| | ||| ||||||||
Sbjct 48095 GGTCAGGTCCTCTTCATCCAGCTGCCAGATTAGGGTGATGTCTGAAGGGTAGAAGCCCAG 48154
Query 527 GGCCCAACA 535
|||||| ||
Sbjct 48155 GGCCCAGCA 48163
>seq66563
Length=108980
Score = 89.7 bits (98), Expect = 4e-13
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 13087 TGCCTACCTGAGCGACAATGGAATCAGCAGCGCCAGGGAGTATGCAGACAGGAGGTGGAT 13146
||||||||||| | ||||||| |||||||| ||||||| |||||||||||||| |||||
Sbjct 44061 TGCCTACCTGAACAACAATGGCATCAGCAGTGCCAGGGTCTATGCAGACAGGAGATGGAT 44002
Query 13147 ATGCAGCAAGCC 13158
|| ||||||||
Sbjct 44001 CTGTAGCAAGCC 43990
>seq34968
Length=251988
Score = 87.8 bits (96), Expect = 1e-12
Identities = 131/187 (70%), Gaps = 0/187 (0%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| | ||| | | ||| || | | | ||
Sbjct 96199 CCTCATGATACACATGGCATGTGTATTTCTCCTCCTCCCCAGAAGGCACCACCAGAGATG 96140
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || || |||||||| |||||| || ||| | | ||
Sbjct 96139 CCCACTTCTGGAAGGTTCCATCCCCTGCAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 96080
Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528
|| ||| |||| | || | ||||| | | ||| ||| | ||| |||||||| ||
Sbjct 96079 TCTGTTCCTCTTCNTCCCTCTGCCAGNTCAGGGTGATGAGGGGAGGGTAGAAGCCCAGGG 96020
Query 529 CCCAACA 535
|||| ||
Sbjct 96019 CCCAGCA 96013
>seq8085
Length=212741
Score = 87.8 bits (96), Expect = 1e-12
Identities = 127/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 360 ACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTGCCCACTTCTGA 419
||||| || || ||| | ||||||| || ||| || | | ||||||||||||||
Sbjct 6652 ACATGGCATGTGTATCTCTGCTCTTCTCCTGAAGGCACCACCACAGCTGCCCACTTCTGG 6711
Query 420 AAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAGTCAGTTGCTCT 479
|| |||||||| || || |||||||| || | | ||| | | ||||| | |||
Sbjct 6712 AAGGTTCCATCCCCTGCAGGTCTGGTCTCAATAAGATCCATGTCCTGGGTCAGGTCCTCC 6771
Query 480 GCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAG-CCAGTGGCCCAACA 535
| | | ||||| || | ||| |||||||||||||||||| |||| |||||| ||
Sbjct 6772 TCATNCCTCTGCCAGGTCAGGGTGATGTCCGCAGGATAGAAGTCCAG-GGCCCAGCA 6827
Score = 84.2 bits (92), Expect = 2e-11
Identities = 132/189 (70%), Gaps = 0/189 (0%)
Strand=Plus/Plus
Query 347 TGCCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGC 406
||| ||||| |||||| | |||||| | ||||| | | ||| || | | ||
Sbjct 15651 TGCTTCATGCAGCACATGATATGTATATCTCTGCTCCTCTCCAGAAGGCACCACCAGAGC 15710
Query 407 TGCCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATC 466
|||||||||||| || |||||||| || || || ||||| || || | ||| | |
Sbjct 15711 TGCCCACTTCTGGAAGGTTCCATCCCCTGCAGGCCTGGTCTCAACAAGGTCCATGTCCTG 15770
Query 467 AGTCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGT 526
||||| | |||| | ||| ||||| ||| ||| ||||| | ||||||||||||
Sbjct 15771 GGTCAGGTCCTCTTCATCCAGCTGCCAGATTAGGGTGATGTCTGAAGGATAGAAGCCCAG 15830
Query 527 GGCCCAACA 535
|||||| ||
Sbjct 15831 GGCCCAGCA 15839
>seq76498
Length=55546
Score = 84.2 bits (92), Expect = 2e-11
Identities = 133/188 (71%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408
||||||| | ||||| || || ||||| ||||| | | ||| || | | | |
Sbjct 35196 CCTCATGGTGCACATGGCATGTGTATTTCTGCTCCTCCCCAGAAGGCACCACCAGAGACG 35137
Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468
|||||||||| || |||||||| || | |||||||| |||||| || ||| | | ||
Sbjct 35136 CCCACTTCTGGAAGGTTCCATCCCCTGAAGGTCTGGTCTCCACCAGCTCCATGTCCTGAG 35077
Query 469 TCAGTTGCT-CTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTG 527
|| | | || || ||||| | ||||| || | || ||| |||||| |||||||| |
Sbjct 35076 TCTGCTCCTCCTCCTCCC-TCTGCCAGGTCAGGGAGATGAGCGCAGGGTAGAAGCCCAGG 35018
Query 528 GCCCAACA 535
||||| ||
Sbjct 35017 GCCCAGCA 35010
>seq18173
Length=40700
Score = 84.2 bits (92), Expect = 2e-11
Identities = 163/241 (68%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 351 TCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTGCC 410
||||||| |||||||| || | | | ||||| | | ||||||| | | ||||||
Sbjct 3797 TCATGTTGCACATGACATGTGTGTCTCTGCTCCTCTCCAGAAGGTACTACCACAGCTGCC 3738
Query 411 CACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAGTC 470
|||||||| || ||||||||||| || || ||||| | ||| || ||| | | ||||
Sbjct 3737 CACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTGTTCACTAGCTCCATGTCCTGAGTC 3678
Query 471 AGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGGCC 530
| | || | || | ||||| || | ||| || || || |||||||| | ||||
Sbjct 3677 TGGTCTTCCCCATCCCTCTGCCAGGTCAGGGTTATCTCAGCTGGATAGAATCTGAGGGCC 3618
Query 531 CAACATTTTAGTGTTACTTGACGGTCAGGTGTTGCTTGTCTGGTCACGTGAACCTGTGGA 590
|| || ||| || || || |||||| | | || ||| || || ||| ||||
Sbjct 3617 CAGCACCTTAAGGTGACACCACCTTCAGGTCTAGGGTGATGGGTTACATGTGCCTTTGGA 3558
Query 591 G 591
|
Sbjct 3557 G 3557
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397168534130088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |