Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23]
119,373 sequences; 2,353,855,022 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq97228 141 2e-28
seq66478 138 3e-27
seq7954 129 1e-24
seq75922 122 2e-22
seq7963 100 6e-16
seq66268 96.9 8e-15
>seq97228
Length=228612
Score = 141 bits (156), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||||| ||||| |||||||| |||||||| ||||| || | | ||| |
Sbjct 211783 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 211724
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| |||||||| || | ||| || || |||||||| ||||||
Sbjct 211723 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCT 211664
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| || || || || |||||||| ||| || || || ||
Sbjct 211663 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 211604
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
| || || || | | || || ||||| | |||||
Sbjct 211603 ATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566
>seq66478
Length=146994
Score = 138 bits (152), Expect = 3e-27
Identities = 156/208 (75%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 194936 GGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCT 194995
|||| || ||||||||||| || || ||||| || | |||||| | |||||||| ||||
Sbjct 11446 GGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCT 11387
Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055
|||| || || ||||| ||||| || ||||| || || ||| | ||||| | || || |
Sbjct 11386 GCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCT 11327
Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112
| |||||| |||||||||||||| ||| |||||||| ||||| | ||||| |
Sbjct 11326 TGGCCTTGACATTCTCAATGGTGTC---ACTGGGATCCACTTCCAGGGTGATGGTCTTGC 11270
Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||| || || || || | |||||
Sbjct 11269 CTGTCAGGGTCTTCACAAAGATCTGCAT 11242
Score = 136 bits (150), Expect = 9e-27
Identities = 161/217 (74%), Gaps = 6/217 (3%)
Strand=Plus/Minus
Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988
|| || ||||| || ||||||||||| || || ||||| || | |||||| | ||||||
Sbjct 11225 AAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCT 11166
Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048
| |||||||| || || ||||| ||||| || ||||| || || ||| | ||||| ||
Sbjct 11165 TTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCC 11106
Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACC 195105
|| || || |||||| |||||||||||||| ||| ||||| || ||||| |
Sbjct 11105 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCNAGGGTGATG 11049
Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||||| || |||| || || | ||| | || |||||
Sbjct 11048 GTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTT 11012
>seq7954
Length=808569
Score = 129 bits (142), Expect = 1e-24
Identities = 154/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||||||| ||||| ||||| |||||||| |||||||| |||| || | | ||| |
Sbjct 793859 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGG 793800
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|||||||| ||||||||||| |||||||| || | ||| || || |||||||| |||||
Sbjct 793799 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCC 793740
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
|| || || || || ||| | || || || ||||| || ||| || || || ||
Sbjct 793739 TTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTG 793680
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131
| || || ||||| || || || || ||
Sbjct 793679 ATGGTTTTCCCTGTAAAGGTCTTCACAAA 793651
>seq75922
Length=371470
Score = 122 bits (134), Expect = 2e-22
Identities = 159/219 (73%), Gaps = 11/219 (5%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| || ||||||||||| || || |||||||| | |||||| | ||||||||
Sbjct 193744 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 193803
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTG-----GAGGAATGCCTTCTTTGT 195046
|||||||| || || ||||| || | |||||||| | | || ||||| || || |
Sbjct 193804 AGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTAT 193863
Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAA 195103
| || || || |||||| |||||||||| ||| ||| |||||||| ||||| |
Sbjct 193864 CCTGGATCTTGGCCTTGACATTCTCAATGGAGTC---ACTGGGCTCCACTTCCAGGGTGA 193920
Query 195104 CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
||||| | |||| || || | ||| | |||||||
Sbjct 193921 TGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTT 193959
>seq7963
Length=681008
Score = 100 bits (110), Expect = 6e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| |||| || ||||||||||| || || |||||||| | |||||| | ||||||||
Sbjct 60901 ACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCT 60960
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| | || ||||| || | || ||||| || || ||||| || || || ||
Sbjct 60961 AGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 61020
Query 195052 ATTTTTTGCTTGACGTTCTCAATGG 195076
|| || ||| | |||||||||||
Sbjct 61021 ATCTTGGCCTTCATGTTCTCAATGG 61045
>seq66268
Length=907216
Score = 96.9 bits (106), Expect = 8e-15
Identities = 140/195 (72%), Gaps = 7/195 (4%)
Strand=Plus/Minus
Query 194940 AAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTT 194999
|||| ||||| |||| || | ||||| || | ||||| | ||||| || ||||||||
Sbjct 480596 AAGA-TGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTGCTT 480538
Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059
|| || || || || | || || || || | |||||||| |||||||| || ||
Sbjct 480537 GCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTGGC 480478
Query 195060 CTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116
|||||| |||||||||||||| ||| || || ||||| || | ||||| || ||
Sbjct 480477 CTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGT 480421
Query 195117 CAAAGTTTTTACGAA 195131
|| || || |||||
Sbjct 480420 CAGGGTCTTCACGAA 480406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1107784684991091
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |