Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Neotoma_20lepida_20[genbank_20GCA_5F001675575.1_202016-06-23] 119,373 sequences; 2,353,855,022 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq97228 141 2e-28 seq66478 138 3e-27 seq7954 129 1e-24 seq75922 122 2e-22 seq7963 100 6e-16 seq66268 96.9 8e-15 >seq97228 Length=228612 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| |||||||| ||||| || | | ||| | Sbjct 211783 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGG 211724 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| |||||||| || | ||| || || |||||||| |||||| Sbjct 211723 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCT 211664 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| || || || || |||||||| ||| || || || || Sbjct 211663 TTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTG 211604 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | || || || | | || || ||||| | ||||| Sbjct 211603 ATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 211566 >seq66478 Length=146994 Score = 138 bits (152), Expect = 3e-27 Identities = 156/208 (75%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 194936 GGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCT 194995 |||| || ||||||||||| || || ||||| || | |||||| | |||||||| |||| Sbjct 11446 GGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCTTCCAGCT 11387 Query 194996 GCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTT 195055 |||| || || ||||| ||||| || ||||| || || ||| | ||||| | || || | Sbjct 11386 GCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTACCCTGGATCT 11327 Query 195056 TTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTC 195112 | |||||| |||||||||||||| ||| |||||||| ||||| | ||||| | Sbjct 11326 TGGCCTTGACATTCTCAATGGTGTC---ACTGGGATCCACTTCCAGGGTGATGGTCTTGC 11270 Query 195113 CTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| || || || || | ||||| Sbjct 11269 CTGTCAGGGTCTTCACAAAGATCTGCAT 11242 Score = 136 bits (150), Expect = 9e-27 Identities = 161/217 (74%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 194929 AAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCT 194988 || || ||||| || ||||||||||| || || ||||| || | |||||| | |||||| Sbjct 11225 AAGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCAGCCATCT 11166 Query 194989 TCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCT 195048 | |||||||| || || ||||| ||||| || ||||| || || ||| | ||||| || Sbjct 11165 TTCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGTCCTCTTTATCC 11106 Query 195049 TGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACC 195105 || || || |||||| |||||||||||||| ||| ||||| || ||||| | Sbjct 11105 TGGATCTTGGCCTTGACATTCTCAATGGTGTC---ACTGGGCTCCACCTCNAGGGTGATG 11049 Query 195106 GTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| || |||| || || | ||| | || ||||| Sbjct 11048 GTCTTGCCGGTCAGGGTCTTCATGAAGATTTTCATTT 11012 >seq7954 Length=808569 Score = 129 bits (142), Expect = 1e-24 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||||||| ||||| ||||| |||||||| |||||||| |||| || | | ||| | Sbjct 793859 AGTCTCAACACAAGATGAAGGGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGG 793800 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| ||||||||||| |||||||| || | ||| || || |||||||| ||||| Sbjct 793799 CCATCTTCCAGCTGCTTACCAGCGAAGATCAGCCTTTGCTGATCAGGAGGAATTCCTTCC 793740 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 || || || || || ||| | || || || ||||| || ||| || || || || Sbjct 793739 TTATCCTGGATCTTGGCCTTCAAATTTTCTATAGTGTCTGAGGGTTCAACCTCGAGCGTG 793680 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 | || || ||||| || || || || || Sbjct 793679 ATGGTTTTCCCTGTAAAGGTCTTCACAAA 793651 >seq75922 Length=371470 Score = 122 bits (134), Expect = 2e-22 Identities = 159/219 (73%), Gaps = 11/219 (5%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 193744 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 193803 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTG-----GAGGAATGCCTTCTTTGT 195046 |||||||| || || ||||| || | |||||||| | | || ||||| || || | Sbjct 193804 AGCTGCTTGCCGGCAAAGATCAGCCTCTGTTGGTCGGGGAGAGGGGGATGCCCTCCTTAT 193863 Query 195047 CTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAA 195103 | || || || |||||| |||||||||| ||| ||| |||||||| ||||| | Sbjct 193864 CCTGGATCTTGGCCTTGACATTCTCAATGGAGTC---ACTGGGCTCCACTTCCAGGGTGA 193920 Query 195104 CCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||||| | |||| || || | ||| | ||||||| Sbjct 193921 TGGTCTTGCTGGTCAGGGTCTTCATGAAGATCTGCATTT 193959 >seq7963 Length=681008 Score = 100 bits (110), Expect = 6e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||| || ||||||||||| || || |||||||| | |||||| | |||||||| Sbjct 60901 ACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCT 60960 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| | || ||||| || | || ||||| || || ||||| || || || || Sbjct 60961 AGCTGCTTGCNGGCAAAGATGAGCCTCTGCTGGTCCGGGGGGATGCCCTCCTTATCCTGG 61020 Query 195052 ATTTTTTGCTTGACGTTCTCAATGG 195076 || || ||| | ||||||||||| Sbjct 61021 ATCTTGGCCTTCATGTTCTCAATGG 61045 >seq66268 Length=907216 Score = 96.9 bits (106), Expect = 8e-15 Identities = 140/195 (72%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 194940 AAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTT 194999 |||| ||||| |||| || | ||||| || | ||||| | ||||| || |||||||| Sbjct 480596 AAGA-TGGACCCTTTCTGGACGTTGTAGTCCGACAGAGTGCCGCCATCCTCCAGCTGCTT 480538 Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 || || || || || | || || || || | |||||||| |||||||| || || Sbjct 480537 GCCAGCAAATATCAGCCTCTGCTGCTCAGGTAGGATGCCTTCCTTGTCTTGGATCTTGGC 480478 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACT---TTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| |||||||||||||| ||| || || ||||| || | ||||| || || Sbjct 480477 CTTGACATTCTCAATGGTGTC---ACTGGGCTCGACCTCAAGAGTGATGGTCTTGCCCGT 480421 Query 195117 CAAAGTTTTTACGAA 195131 || || || ||||| Sbjct 480420 CAGGGTCTTCACGAA 480406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1107784684991091